PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022925576.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 279aa    MW: 32867.1 Da    PI: 6.7066
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022925576.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.9e-261059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRr+g++KK +ELSvLCda++ +i+fss+gkl+ y++
  XP_022925576.1 10 RIENRTTRQVTFSKRRAGVFKKTHELSVLCDAQIGLIVFSSNGKLFQYCT 59
                    8***********************************************96 PP
2K-box51.44.6e-18841721199
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      ++ e+l++ l+ ++k ++ Lq ++ ++  ed ++ +l++L+ +e++L++sl ++R++K+ell +q+++l++kek+l++en+++ + ++
  XP_022925576.1  84 MNHPEELERRLRIMRKDTDDLQLSLQRYTAEDFSTFQLRDLHDIENRLQNSLDRVRARKSELLQQQVDNLRRKEKMLEDENEQIYHLIK 172
                     5678999999************************************************************************9988776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MGRGKIAIRR IENRTTRQVT FSKRRAGVFK KTHELSVLCD AQIGLIVFSS NGKLFQYCTQ  60
PACMDQIIRR YQIAVGNPIP EQNMNHPEEL ERRLRIMRKD TDDLQLSLQR YTAEDFSTFQ  120
LRDLHDIENR LQNSLDRVRA RKSELLQQQV DNLRRKEKML EDENEQIYHL IKEQQMAMEE  180
QQVVAMMQKR RSDDVEEEQV VNMDGDDGFG FDNSSNDIHP HLQLQLQHYH QHQHHHEPSS  240
VLQLAPLPSP PPPPPFLPYR LQPFQPNLQD INLHSSTYE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-48MIKC_MADS family protein