PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022922663.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MIKC_MADS

Protein Properties

Length: 250aa MW: 28800.2 Da PI: 9.9285

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022922663.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.3	4.1e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr g+lKKA ELS+LCdaev +iifsstgkly+yss XP_022922663.1 10 RIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSS 59 8***********************************************96 PP
2	K-box	74.3	3.5e-25	81	175	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke....kelqeenkaLrkkle 99 + ++ + +++e+a Lk++++ +q+ +R+l+Ge+L+ Ls+k+Lq+Le+qLe slk +R kK+++l e+i +l++k +++++en +L kkl+ XP_022922663.1 81 NPVSELQFWKREAAGLKQQLHYMQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSEEITQLRQKVpptgNQMHQENLELYKKLD 175 566789*********************************************************************64444788888888888875 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KARELSILCD AEVGLIIFSS TGKLYDYSSS 60 SIRSITDRYN KMKEEQNQLM NPVSELQFWK REAAGLKQQL HYMQECHRQL MGEELSGLSV 120 KDLQNLESQL EMSLKGVRVK KEKILSEEIT QLRQKVPPTG NQMHQENLEL YKKLDMIRKE 180 NAELQMKYQV YGPMEVDKTS SSTVHQFTFA NRYAMPAPVH LQLRQPQPQN NETSVPGIKL 240 GYVLANCVMT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	7e-89	MIKC_MADS family protein