PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022774097.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

MIKC_MADS

Protein Properties

Length: 343aa MW: 38136.8 Da PI: 5.3899

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022774097.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.3	8.3e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g++ +s XP_022774097.1 9 KRIENDTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRVSHFS 58 79********************************************9997 PP
2	K-box	32.3	4e-12	108	180	7	79
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 + +++++ e+ q+e+ +L+ +++ ++++R + e L+ s+ +L++ e++Le++l ++ ++Kn l+ +++++ XP_022774097.1 108 STTTNSNVEEIQREIGNLQHQLQLAEEQLRVYEPEPLTLTSMADLESCEKNLEQALARVTQRKNYLISNHMST 180 3368899**************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MGRVKLQIKR IENDTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRVSHFSGK 60 KRIEDVLNRY INLPDQDRGG LVRNKEFLLS TLKKLQAEND FALQLASSTT TNSNVEEIQR 120 EIGNLQHQLQ LAEEQLRVYE PEPLTLTSMA DLESCEKNLE QALARVTQRK NYLISNHMST 180 FTDPTNVQIY LDAQEGVPSS FGNEVVGWLP DNAGGQNPTH YCAGSESSCI PVRNQTSIST 240 IYDPMPHGTN MTVDTCDMGG CHVSTSSNDG LPPWHHSYSS TELLSAFMSS PTSFPLMKDI 300 AGPSISPSVV SQQQVEKPSN WPQMPSSDEG ANYESKLPHL TVD

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MGRVKLQIKR IENDTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRVSHFSGK  60
KRIEDVLNRY INLPDQDRGG LVRNKEFLLS TLKKLQAEND FALQLASSTT TNSNVEEIQR  120
EIGNLQHQLQ LAEEQLRVYE PEPLTLTSMA DLESCEKNLE QALARVTQRK NYLISNHMST  180
FTDPTNVQIY LDAQEGVPSS FGNEVVGWLP DNAGGQNPTH YCAGSESSCI PVRNQTSIST  240
IYDPMPHGTN MTVDTCDMGG CHVSTSSNDG LPPWHHSYSS TELLSAFMSS PTSFPLMKDI  300
AGPSISPSVV SQQQVEKPSN WPQMPSSDEG ANYESKLPHL TVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	2e-81	MIKC_MADS family protein