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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022772903.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 224aa MW: 25352.9 Da PI: 8.4724 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.3 | 4.2e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ +s XP_022772903.1 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSLFS 58 79*******************************************98776 PP | |||||||
2 | K-box | 18.1 | 1.1e-07 | 109 | 170 | 9 | 70 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 +++ e+ qqe+ k k++i +++ +R + Ge e +l + + eq Le+ lk++R +K+ XP_022772903.1 109 SIDSQLEEFQQEIVKCKSRIVDMEKRLRIFDGEPSEITTLSQAEYHEQILEETLKQVRLRKQ 170 567889**************************975555555556669*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSLFSGN 60 KSIEEILGRY VNLPEHERGR LRNKEFLIKA LGKLRDEADQ THQAASPVSI DSQLEEFQQE 120 IVKCKSRIVD MEKRLRIFDG EPSEITTLSQ AEYHEQILEE TLKQVRLRKQ VLQEKYSSPG 180 PPPTVQVHLP SDTAEVSGFV TGSSSSILDW IPQRDPQGSV TTSC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 9e-56 | MIKC_MADS family protein |