PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022772311.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

MIKC_MADS

Protein Properties

Length: 346aa MW: 39377.8 Da PI: 5.1134

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022772311.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.1	2e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g++ +s XP_022772311.1 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRISHFS 58 79*******************************************99987 PP
2	K-box	24.9	8.2e-10	121	190	9	78
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 ++++ ++ qqe+ +L++++++ ++++R + + L s+ eL++ e++L + l ++ ++K+ +l ++++ XP_022772311.1 121 SCNSDFKEIQQEIVRLQQQLQMAEEQLRAYEPDPLRFTSMGELESCEKHLVETLANVVQRKEYILSNHLS 190 6788899**********************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRISHFSGG 60 RRIEDVFTRY INLPDREREH ALXFPEQIRH PDIQNKEYLL RILQQLRSEN DIALQLANPT 120 SCNSDFKEIQ QEIVRLQQQL QMAEEQLRAY EPDPLRFTSM GELESCEKHL VETLANVVQR 180 KEYILSNHLS SYDPSPIQQG LPPSFENEVV NWLPDSGQNQ SQIFDASASL NPLRDLSSTV 240 YDPLLQGSIS NVDPHSIGDQ CHVSNPSGEN FPLWPQPFAS TGLQSSPLPQ TLYAHLQHGM 300 VGQEMPEMMP NDQRMEIPGN SSSHGQRADN EGSNYNENRV PQLNGQ

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRISHFSGG  60
RRIEDVFTRY INLPDREREH ALXFPEQIRH PDIQNKEYLL RILQQLRSEN DIALQLANPT  120
SCNSDFKEIQ QEIVRLQQQL QMAEEQLRAY EPDPLRFTSM GELESCEKHL VETLANVVQR  180
KEYILSNHLS SYDPSPIQQG LPPSFENEVV NWLPDSGQNQ SQIFDASASL NPLRDLSSTV  240
YDPLLQGSIS NVDPHSIGDQ CHVSNPSGEN FPLWPQPFAS TGLQSSPLPQ TLYAHLQHGM  300
VGQEMPEMMP NDQRMEIPGN SSSHGQRADN EGSNYNENRV PQLNGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-125	MIKC_MADS family protein