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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022730039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 206aa MW: 23929.4 Da PI: 10.4405 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.6 | 8.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqv+fskRrng+lKKA+ELS+LCdaeva++ifss+gk+y ++s XP_022730039.1 9 KRIENPTNRQVSFSKRRNGLLKKAFELSILCDAEVALLIFSSSGKVYQFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 69.1 | 1.4e-23 | 84 | 172 | 12 | 100 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++e ++ e++ Lk+ i++L ++hl Ged+ L +++L+qLe+qL+ ++++iRs+K++++ +q l+++ k+l+een++L+k+l+e XP_022730039.1 84 RTMEFWRSEIEELKRSINTLDARLKHLSGEDILALGMRDLKQLERQLKIGVERIRSRKSRIVSDQATLLKRRHKQLKEENTQLQKRLDE 172 56899********************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence |
MRRGKVELKR IENPTNRQVS FSKRRNGLLK KAFELSILCD AEVALLIFSS SGKVYQFASH 60 GMDKSIAKYK REVGLPDSNN PQFRTMEFWR SEIEELKRSI NTLDARLKHL SGEDILALGM 120 RDLKQLERQL KIGVERIRSR KSRIVSDQAT LLKRRHKQLK EENTQLQKRL DEAQESNISS 180 RIVGENACSM FQQRVLQDED LVNEAE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 1e-48 | MIKC_MADS family protein |