PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022727576.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28126 Da    PI: 8.5739
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022727576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.3e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  XP_022727576.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59
                    79***********************************************96 PP

2K-box95.11.1e-31801746100
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      ++ +++ ++s+++e+ kLk ++e Lqr+qR+llGedL++L+ keL+qLe+qLe+slk++Rs K++++l+q+++lq+ke++l e+n+ L+ kl+e
  XP_022727576.1  80 VNKPAKELEQSSYREYLKLKTRYEALQRTQRNLLGEDLGPLDSKELEQLERQLESSLKHVRSIKTQYMLDQLSDLQNKEQMLMEANRVLSIKLDE 174
                     55566777899******************************************************************************999876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGKLYEFCST  60
SSMLKTLDRY QKCSYGAVEV NKPAKELEQS SYREYLKLKT RYEALQRTQR NLLGEDLGPL  120
DSKELEQLER QLESSLKHVR SIKTQYMLDQ LSDLQNKEQM LMEANRVLSI KLDEISTRNQ  180
FQASWEGGEQ SVTFSNQQAD QSQGLFQPLE CNPTLQIGYN PVASDQMAAT THAQQVNGFI  240
PGWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-122MIKC_MADS family protein