PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022724124.1
Organism
Durio zibethinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 28104.9 Da    PI: 9.9799
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022724124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.9e-312473150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  XP_022724124.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 73
                    79***********************************************8 PP
2K-box115.35.7e-38931886100
           K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++  ++ea+a+ +qqe++kL+++i+nLq+++R++lGe+L+sL +k+L++Le++Lek++++iRskKnell++++e++qkke +l+++n+ Lr+k++
  XP_022724124.1  93 NTGlVSEANAQFYQQEADKLRDQIRNLQNSNRNMLGESLGSLPMKDLKNLETRLEKGISRIRSKKNELLFAEMEYMQKKEIDLHNNNQLLRAKIA 187
                     344699***************************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_022724124.1 188 E 188
                     6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MVNPNEPCEN SPQKKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSNRGRLY EYANNSVKTT IERYKKASAD SANTGLVSEA NAQFYQQEAD KLRDQIRNLQ  120
NSNRNMLGES LGSLPMKDLK NLETRLEKGI SRIRSKKNEL LFAEMEYMQK KEIDLHNNNQ  180
LLRAKIAENE RKQQDMNLMP GGSNFEVMHS QQFDSRNYFQ VNDSMHYNPT ITAPTRTRWP  240
FN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-116MIKC_MADS family protein