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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022715838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | MYB | ||||||||
Protein Properties | Length: 403aa MW: 43625.5 Da PI: 4.9975 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.9 | 7.6e-11 | 14 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+ +++++G g g++R++k+c++rw +yl XP_022715838.1 14 RGAWTAEEDQKLIAYIQKHGEG---------GLRRCGKSCRLRWVNYL 52 89********************.........889************97 PP | |||||||
2 | Myb_DNA-binding | 49.4 | 1e-15 | 58 | 102 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T +E + ++++++ lG++ W++Iar+++ +Rt++++k++w+ + XP_022715838.1 58 RGDFTSDEAQTIIELHAALGNR-WAAIARHLP-KRTDNEIKNYWNAH 102 899*******************.*********.***********976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence |
MGRIPLCSAD GLKRGAWTAE EDQKLIAYIQ KHGEGGLRRC GKSCRLRWVN YLRPGVKRGD 60 FTSDEAQTII ELHAALGNRW AAIARHLPKR TDNEIKNYWN AHLKKRLVNL GIDPVTHKPV 120 GTARGTSSSE NSSTTVVNTD SMIILEENAT SKESEPTSQQ PTSSRSASAS ALLLNKLATR 180 VTTLQCVDLD PVRACQRLQT MSFNSTTNDG GANSESSTAT ICHPTSSCEG NNASIALDTS 240 DYWPVNISDP LTTPLNCLDL LNIVLSPVSA DHGNAGEEGG VSFDANIEYP DLSDALSILE 300 GNASEPARSC SSTSSRVLNN MASKFASSRC IDELYNWQNR NNISPGPIQG DHSVTTTTIG 360 DGGLSTNDIN IDDMIFDTVG SPVFYNPIYL ENELVPSNLF YIP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61420.2 | 3e-62 | MYB family protein |