PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021678745.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family MIKC_MADS
Protein Properties Length: 329aa    MW: 37512.4 Da    PI: 6.1216
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021678745.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.5e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvt+skRrng++KKA+ELSvLCd++va+i+fs++g+l  +s
  XP_021678745.1  9 KRIENTTNRQVTYSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFS 58
                    79*******************************************98776 PP

2K-box21.87.9e-09104171370
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                     ++s+ + ++++ e+ qqe+ + k+++e +++++R l G+  ++ +l e +  eq Le++lk++  +K+
  XP_021678745.1 104 AASNPAITDSQLEEFQQEIVRFKSQVEDMEKQIRILEGNLSHTTTLPEAEYQEQILEEALKRVQMRKQ 171
                     456666999*********************************************************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MGRVKLQIKR IENTTNRQVT YSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSLFSGN  60
KSIEEILTRY VNLPEHERGR LHKQEFLEKA LGKLKAEGDR NHQAASNPAI TDSQLEEFQQ  120
EIVRFKSQVE DMEKQIRILE GNLSHTTTLP EAEYQEQILE EALKRVQMRK QVLEEKYNSS  180
GAPTVSQCNQ AHLPPKNAYV NDLVTEESPN NVLDWLRQRE PQVQILNFLD SNGLLPLRNQ  240
VQHAAEIFLP SPATLLHGQN INLDDHISPR SGLEDDNNVQ RPEFGQVIDV NLSPWAEFYP  300
TGNSSILTSQ PRERALLELY LSRIAPSTI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.14e-52MIKC_MADS family protein