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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021678745.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 329aa MW: 37512.4 Da PI: 6.1216 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.7 | 6.5e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvt+skRrng++KKA+ELSvLCd++va+i+fs++g+l +s XP_021678745.1 9 KRIENTTNRQVTYSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFS 58 79*******************************************98776 PP | |||||||
2 | K-box | 21.8 | 7.9e-09 | 104 | 171 | 3 | 70 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 ++s+ + ++++ e+ qqe+ + k+++e +++++R l G+ ++ +l e + eq Le++lk++ +K+ XP_021678745.1 104 AASNPAITDSQLEEFQQEIVRFKSQVEDMEKQIRILEGNLSHTTTLPEAEYQEQILEEALKRVQMRKQ 171 456666999*********************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence |
MGRVKLQIKR IENTTNRQVT YSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSLFSGN 60 KSIEEILTRY VNLPEHERGR LHKQEFLEKA LGKLKAEGDR NHQAASNPAI TDSQLEEFQQ 120 EIVRFKSQVE DMEKQIRILE GNLSHTTTLP EAEYQEQILE EALKRVQMRK QVLEEKYNSS 180 GAPTVSQCNQ AHLPPKNAYV NDLVTEESPN NVLDWLRQRE PQVQILNFLD SNGLLPLRNQ 240 VQHAAEIFLP SPATLLHGQN INLDDHISPR SGLEDDNNVQ RPEFGQVIDV NLSPWAEFYP 300 TGNSSILTSQ PRERALLELY LSRIAPSTI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 4e-52 | MIKC_MADS family protein |