PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021648253.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27413.4 Da    PI: 9.8725
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021648253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.9e-261059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n + rqvtfskRr g+lKKA ELS+LCdaev viifss+ kly+y+s
  XP_021648253.1 10 RIDNPTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSNSKLYDYAS 59
                    8***********************************************86 PP

2K-box85.11.5e-2877171699
           K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +++ + +++ + +q+e+a L+ke++ Lq+ +R+l+Ge+L+ Ls+k+L++Le+qLe slk +R kK+++l+e+i+el +k +   een +L+kk++
  XP_021648253.1  77 NQQmNPASEIKFWQREAASLRKELQYLQECHRKLMGEELSGLSVKDLKNLENQLEMSLKGVRMKKDQILTEEIKELNRKGNLSYEENLKLHKKVD 171
                     3334678899**********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MGRGKIAIRR IDNPTSRQVT FSKRRSGLLK KARELSILCD AEVGVIIFSS NSKLYDYAST  60
SMNSVIERYN KVREEQNQQM NPASEIKFWQ REAASLRKEL QYLQECHRKL MGEELSGLSV  120
KDLKNLENQL EMSLKGVRMK KDQILTEEIK ELNRKGNLSY EENLKLHKKV DLLCQENAEL  180
HKKAHGKRDA SEANKSSHPP YTLSNGYDLH APIHLQLSQP QPHTSESLPT SMKLGLQLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.11e-102MIKC_MADS family protein