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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020703752.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | LBD | ||||||||
Protein Properties | Length: 262aa MW: 29759.7 Da PI: 4.4216 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.5 | 4.7e-38 | 47 | 143 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC +dC++apyf eq++ fa vh++FGasnv k+l++l++ er+da+ slvye+++ dPvyG+v++i+ lqqqleq + el+ XP_020703752.1 47 PCAACKYLRRKCHPDCIFAPYFLPEQQQMFALVHRVFGASNVAKILTDLHPRERQDAVISLVYESKMYFIDPVYGCVRTISGLQQQLEQIQFELS 141 7*******************************************************************************************999 PP DUF260 96 ll 97 ++ XP_020703752.1 142 YA 143 86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence |
MNLSEMTTMT LASMDDQQSP ILSTPSSVLS SSSSSMAAEW GSVQNTPCAA CKYLRRKCHP 60 DCIFAPYFLP EQQQMFALVH RVFGASNVAK ILTDLHPRER QDAVISLVYE SKMYFIDPVY 120 GCVRTISGLQ QQLEQIQFEL SYAFSELSRW ESAMAALEER KLKMEEQQNV MMINNGCDGS 180 ALEGVVKSQV YDFSMVVDKE TSTREKDVGA FQSQYDFAED DELRSLLEWQ VDQQEERVLD 240 IYLAASPKPL AEEKCSPRMF NK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 4e-41 | LBD family protein |