PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020703752.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 262aa    MW: 29759.7 Da    PI: 4.4216
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020703752.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.54.7e-3847143197
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC +dC++apyf  eq++ fa vh++FGasnv k+l++l++ er+da+ slvye+++   dPvyG+v++i+ lqqqleq + el+
  XP_020703752.1  47 PCAACKYLRRKCHPDCIFAPYFLPEQQQMFALVHRVFGASNVAKILTDLHPRERQDAVISLVYESKMYFIDPVYGCVRTISGLQQQLEQIQFELS 141
                     7*******************************************************************************************999 PP

          DUF260  96 ll 97 
                     ++
  XP_020703752.1 142 YA 143
                     86 PP

Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MNLSEMTTMT LASMDDQQSP ILSTPSSVLS SSSSSMAAEW GSVQNTPCAA CKYLRRKCHP  60
DCIFAPYFLP EQQQMFALVH RVFGASNVAK ILTDLHPRER QDAVISLVYE SKMYFIDPVY  120
GCVRTISGLQ QQLEQIQFEL SYAFSELSRW ESAMAALEER KLKMEEQQNV MMINNGCDGS  180
ALEGVVKSQV YDFSMVVDKE TSTREKDVGA FQSQYDFAED DELRSLLEWQ VDQQEERVLD  240
IYLAASPKPL AEEKCSPRMF NK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.34e-41LBD family protein