PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020702210.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 212aa    MW: 22851.8 Da    PI: 7.8252
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020702210.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.84.3e-44331321100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrrkC++dCv+apyfp ++p+kf nvh++FGasnv+k+l++l++ +reda++sl+yeAe+r+rdPvyG+vg+i+ lq+ql+ql+ +l+
  XP_020702210.1  33 PCAGCKFLRRKCQPDCVFAPYFPPDEPQKFVNVHRVFGASNVTKILNELHPLQREDAVNSLAYEAEMRLRDPVYGCVGIISVLQHQLRQLQMDLS 127
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_020702210.1 128 RARSE 132
                     99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MEPLALSSIS NGHVAASNGA AVTGNGSQMV STPCAGCKFL RRKCQPDCVF APYFPPDEPQ  60
KFVNVHRVFG ASNVTKILNE LHPLQREDAV NSLAYEAEMR LRDPVYGCVG IISVLQHQLR  120
QLQMDLSRAR SELCKYQAAA AGMEQLWGPM GQNQQQQHQQ QQRVVMMRGY GGGPEVGGYD  180
VGLMTAAAFG GQFGRFSGAA GGDDRQSTLG SS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.36e-60LBD family protein