PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698423.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

LBD

Protein Properties

Length: 280aa MW: 31140 Da PI: 7.3006

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698423.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.5	2.6e-39	8	108	1	100
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC + C++apyfp ++p kf vh++FGasnv+kll++l++ +reda++sl+yeAear++dPv G+vg i+ lq++l+ql+ +l XP_020698423.1 8 PCAACKFLRRKCMPTgCIFAPYFPPDNPTKFIHVHRVFGASNVSKLLNELSPAQREDAVNSLAYEAEARLHDPVLGCVGYISLLQHRLMQLQRDL 102 7*********9877***************************************************************************** PP DUF260 95 allkee 100 +++k+e XP_020698423.1 103 SAAKRE 108 *99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MSSSSNSPCA ACKFLRRKCM PTGCIFAPYF PPDNPTKFIH VHRVFGASNV SKLLNELSPA 60 QREDAVNSLA YEAEARLHDP VLGCVGYISL LQHRLMQLQR DLSAAKRELS LCICPGPQNQ 120 FYAEAMAVRA GLAGQGSAST SAAPPMYKDQ QHHQYQHHHH QQQQQQQMMV EIQQLAEVVA 180 AEREHEMLRR REHEILRSIE QQHVLARLIG DGSSGGAAAA EASPPLALVS PHISGFEGSF 240 AELQHQQGLQ FQEGSGLRLH HNFHQRRRFD EERSGEGPSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	3e-52	LBD family protein