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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020698423.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | LBD | ||||||||
Protein Properties | Length: 280aa MW: 31140 Da PI: 7.3006 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.5 | 2.6e-39 | 8 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC + C++apyfp ++p kf vh++FGasnv+kll++l++ +reda++sl+yeAear++dPv G+vg i+ lq++l+ql+ +l XP_020698423.1 8 PCAACKFLRRKCMPTgCIFAPYFPPDNPTKFIHVHRVFGASNVSKLLNELSPAQREDAVNSLAYEAEARLHDPVLGCVGYISLLQHRLMQLQRDL 102 7***********9877******************************************************************************* PP DUF260 95 allkee 100 +++k+e XP_020698423.1 103 SAAKRE 108 *99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence |
MSSSSNSPCA ACKFLRRKCM PTGCIFAPYF PPDNPTKFIH VHRVFGASNV SKLLNELSPA 60 QREDAVNSLA YEAEARLHDP VLGCVGYISL LQHRLMQLQR DLSAAKRELS LCICPGPQNQ 120 FYAEAMAVRA GLAGQGSAST SAAPPMYKDQ QHHQYQHHHH QQQQQQQMMV EIQQLAEVVA 180 AEREHEMLRR REHEILRSIE QQHVLARLIG DGSSGGAAAA EASPPLALVS PHISGFEGSF 240 AELQHQQGLQ FQEGSGLRLH HNFHQRRRFD EERSGEGPSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.2 | 3e-52 | LBD family protein |