PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020698423.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 280aa    MW: 31140 Da    PI: 7.3006
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020698423.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.6e-3981081100
          DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +CaaCk+lrrkC +  C++apyfp ++p kf  vh++FGasnv+kll++l++ +reda++sl+yeAear++dPv G+vg i+ lq++l+ql+ +l
  XP_020698423.1   8 PCAACKFLRRKCMPTgCIFAPYFPPDNPTKFIHVHRVFGASNVSKLLNELSPAQREDAVNSLAYEAEARLHDPVLGCVGYISLLQHRLMQLQRDL 102
                     7***********9877******************************************************************************* PP

          DUF260  95 allkee 100
                     +++k+e
  XP_020698423.1 103 SAAKRE 108
                     *99876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MSSSSNSPCA ACKFLRRKCM PTGCIFAPYF PPDNPTKFIH VHRVFGASNV SKLLNELSPA  60
QREDAVNSLA YEAEARLHDP VLGCVGYISL LQHRLMQLQR DLSAAKRELS LCICPGPQNQ  120
FYAEAMAVRA GLAGQGSAST SAAPPMYKDQ QHHQYQHHHH QQQQQQQMMV EIQQLAEVVA  180
AEREHEMLRR REHEILRSIE QQHVLARLIG DGSSGGAAAA EASPPLALVS PHISGFEGSF  240
AELQHQQGLQ FQEGSGLRLH HNFHQRRRFD EERSGEGPSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.23e-52LBD family protein