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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020695176.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 21600.5 Da PI: 6.0903 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.5 | 6.4e-40 | 34 | 133 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+lapyfp ++p kf +h++FGasn++k l++lpe++r da+ss+vyeA++r+rdPvyG++g i lq+q+ l+a+la XP_020695176.1 34 PCAACKILRRRCANQCILAPYFPPTEPLKFTTAHHVFGASNIIKSLQELPESQRADAVSSMVYEANVRIRDPVYGCAGAICYLQKQVVDLQAQLA 128 7********************************************************************************************** PP DUF260 96 llkee 100 + +++ XP_020695176.1 129 RCRAQ 133 99887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MESSLYPLFS STSSSSSSPP LPQAQTPKTS YQSPCAACKI LRRRCANQCI LAPYFPPTEP 60 LKFTTAHHVF GASNIIKSLQ ELPESQRADA VSSMVYEANV RIRDPVYGCA GAICYLQKQV 120 VDLQAQLARC RAQLLAVETQ HAQILTLFYK DMDFSSLPQL PVNSPSAALN PFEGLDDFLL 180 DDNSHGTIRE ETLWAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-53 | LBD family protein |