PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020693551.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

LBD

Protein Properties

Length: 277aa MW: 31153.6 Da PI: 4.3652

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020693551.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.5	2.5e-39	22	120	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC++dC+lap fpa+++++f nvh+lFG+sn+lk+lk++++++r++am+s+++++++ra+dP G++++i +lq++++ ++ael+ XP_020693551.1 22 ACAACKFQRRKCTSDCTLAPFFPADKQSQFLNVHRLFGVSNILKILKSIEPDRRQEAMNSIIFQSNVRAQDPAGGCYRIIVDLQRRINAAQAELQ 116 7********************************************************************************************99 PP DUF260 96 llke 99 + + XP_020693551.1 117 FVLR 120 8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MNPLTPESDL SYSIPTASAC TACAACKFQR RKCTSDCTLA PFFPADKQSQ FLNVHRLFGV 60 SNILKILKSI EPDRRQEAMN SIIFQSNVRA QDPAGGCYRI IVDLQRRINA AQAELQFVLR 120 QIASFRAQFD ASSDIQPNLL LSQQQHQYYN DHYFSCDGQQ DLHDFHEHNL IGIDINTINA 180 DEELTQEQIL SIQQKAEGEE DVDERPPLDM SEMGRHAFGI SADYEDVESK VNVGSTVMAL 240 SSSDIEVEAK TIEQGEENDL KRAASFFTLT NYDTSDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-37	LBD family protein