PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693551.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 277aa    MW: 31153.6 Da    PI: 4.3652
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693551.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.5e-3922120199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rrkC++dC+lap fpa+++++f nvh+lFG+sn+lk+lk++++++r++am+s+++++++ra+dP  G++++i +lq++++ ++ael+
  XP_020693551.1  22 ACAACKFQRRKCTSDCTLAPFFPADKQSQFLNVHRLFGVSNILKILKSIEPDRRQEAMNSIIFQSNVRAQDPAGGCYRIIVDLQRRINAAQAELQ 116
                     7********************************************************************************************99 PP

          DUF260  96 llke 99 
                      + +
  XP_020693551.1 117 FVLR 120
                     8765 PP

Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MNPLTPESDL SYSIPTASAC TACAACKFQR RKCTSDCTLA PFFPADKQSQ FLNVHRLFGV  60
SNILKILKSI EPDRRQEAMN SIIFQSNVRA QDPAGGCYRI IVDLQRRINA AQAELQFVLR  120
QIASFRAQFD ASSDIQPNLL LSQQQHQYYN DHYFSCDGQQ DLHDFHEHNL IGIDINTINA  180
DEELTQEQIL SIQQKAEGEE DVDERPPLDM SEMGRHAFGI SADYEDVESK VNVGSTVMAL  240
SSSDIEVEAK TIEQGEENDL KRAASFFTLT NYDTSDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-37LBD family protein