PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020686925.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

LBD

Protein Properties

Length: 307aa MW: 34326.5 Da PI: 4.9942

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020686925.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.3	7.1e-40	25	124	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C++dC+lap+fpa++p++f nvh+lFG+sn+lk+lk+++++ +++am+s++++A+arardPv G++++il+lq+q e l++el+ XP_020686925.1 25 ACAACKYQRRRCTPDCTLAPHFPANNPRQFLNVHRLFGVSNILKILKTVEPHLHKEAMASIIFQANARARDPVGGCYRIILQLQHQHEALSSELQ 119 7********************************************************************************************99 PP DUF260 96 llkee 100 + ++ XP_020686925.1 120 CVLNQ 124 88766 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MSSLISHPKA NHISAHSSPS SASSACAACK YQRRRCTPDC TLAPHFPANN PRQFLNVHRL 60 FGVSNILKIL KTVEPHLHKE AMASIIFQAN ARARDPVGGC YRIILQLQHQ HEALSSELQC 120 VLNQIAIYRT QIEKAASMIG SDEAIYTPPD AIIDIYENMA IMQQQQAQQQ QQQQQYGNYF 180 FCGAQEPYQN INSNENTNNM LANEAEFDLS MNLLGNDMLE MDMIGSRLNF GQEEDVKPLD 240 DTFGMRNTFV KNEDSLDVTA GSSITAVQCS SNTEQKDDQS PVEQLQEHEL KCAASYFTLQ 300 NCNISVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-37	LBD family protein