PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020686252.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CAMTA

Protein Properties

Length: 806aa MW: 89893.9 Da PI: 5.0493

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020686252.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	174.1	2e-54	10	125	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 + k+rwl+++ei +iL n++++++t ++++ p+ gsl++++rk +ryfrkDG++wkkkkdgktvrE+hekLK g++++l+cyYah+e++ +fqrr XP_020686252.2 10 EAKSRWLRPTEISTILRNYRRFNITPDPPNLPPGGSLFIFDRKALRYFRKDGHQWKKKKDGKTVREAHEKLKAGSIDILHCYYAHGEDDDNFQRR 104 459****************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylevk 118 cywlL+ +le+ivlvhy++vk XP_020686252.2 105 CYWLLDGQLEHIVLVHYRDVK 125 ****************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence
MADMRQILAE AKSRWLRPTE ISTILRNYRR FNITPDPPNL PPGGSLFIFD RKALRYFRKD 60 GHQWKKKKDG KTVREAHEKL KAGSIDILHC YYAHGEDDDN FQRRCYWLLD GQLEHIVLVH 120 YRDVKEETSS SDPQLLSKGP TSQGAETSSV ADSAHINAST FVNPSSYAPI TTNVNWSMPI 180 ASSEFEGVDL GNDLTGVPFV KSVPGSGLQV ASLPGNSITG PISALTGSSL PPYTAGSMNT 240 ERLNRSINHF FLNQVTSLNL IPDEGQNVQG TSHAAGSFGF QFNDENSPST RSGSHSLKQK 300 LTDTAEQNFS LQQLSCTDAL STRSRDSIAQ NEERIKFSLH DDFNVLPEPY SQPLTVDDII 360 QVEEENAGVA DHSVEDCVSN DSVQRYEIFH DNQLDLAPPS DLNEQEEKVP TVFKNSLGMD 420 IYDNDPGGSF ERWMDKELGN DCSDILMASD SCSNWNAIDT QNDKVFSGLS RHIQLDVDSV 480 TPLLSQEQLF SIDDFSPDWA YSGDETKVLI SGVFLGGVQP SSIKWCCMFG EVEVSAQVLT 540 TNAIRCQAPP HSPGRVPFYI TCSNRLACSE VREFEYRENP TGTAISESLK NESEDEMYLQ 600 IRFAKMLSLG SDKKRLLCST ENCAKCIVKK SLAHMLIDDE PGWEKIEKET KTCQGHLWNL 660 RDALLEKLLK GRLYEWLVCK LHEDGKGPNI LDDKGQGAIH LAAALGYEWA MTSIISAGVN 720 PSFRDARGRT ALHWAAYYGR VANYLAIWAI IGVVSLICLF RAFGFCQFKT HVSAYQNYST 780 TLFFLKEYSL FIFSLKDGSI QLLVPA

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence

MADMRQILAE AKSRWLRPTE ISTILRNYRR FNITPDPPNL PPGGSLFIFD RKALRYFRKD  60
GHQWKKKKDG KTVREAHEKL KAGSIDILHC YYAHGEDDDN FQRRCYWLLD GQLEHIVLVH  120
YRDVKEETSS SDPQLLSKGP TSQGAETSSV ADSAHINAST FVNPSSYAPI TTNVNWSMPI  180
ASSEFEGVDL GNDLTGVPFV KSVPGSGLQV ASLPGNSITG PISALTGSSL PPYTAGSMNT  240
ERLNRSINHF FLNQVTSLNL IPDEGQNVQG TSHAAGSFGF QFNDENSPST RSGSHSLKQK  300
LTDTAEQNFS LQQLSCTDAL STRSRDSIAQ NEERIKFSLH DDFNVLPEPY SQPLTVDDII  360
QVEEENAGVA DHSVEDCVSN DSVQRYEIFH DNQLDLAPPS DLNEQEEKVP TVFKNSLGMD  420
IYDNDPGGSF ERWMDKELGN DCSDILMASD SCSNWNAIDT QNDKVFSGLS RHIQLDVDSV  480
TPLLSQEQLF SIDDFSPDWA YSGDETKVLI SGVFLGGVQP SSIKWCCMFG EVEVSAQVLT  540
TNAIRCQAPP HSPGRVPFYI TCSNRLACSE VREFEYRENP TGTAISESLK NESEDEMYLQ  600
IRFAKMLSLG SDKKRLLCST ENCAKCIVKK SLAHMLIDDE PGWEKIEKET KTCQGHLWNL  660
RDALLEKLLK GRLYEWLVCK LHEDGKGPNI LDDKGQGAIH LAAALGYEWA MTSIISAGVN  720
PSFRDARGRT ALHWAAYYGR VANYLAIWAI IGVVSLICLF RAFGFCQFKT HVSAYQNYST  780
TLFFLKEYSL FIFSLKDGSI QLLVPA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	1e-69	CAMTA family protein