PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020682548.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CAMTA

Protein Properties

Length: 1029aa MW: 116485 Da PI: 6.4411

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020682548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181.2	1.2e-56	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL n++k++++ e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+v+vl+cyYah+e+n++fqr XP_020682548.1 20 REaQHRWLRPAEICEILRNYHKFRIAPEPQNKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNENFQR 114 4449***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Leeel +ivlvhy+evk XP_020682548.1 115 RSYWMLEEELMHIVLVHYREVK 136 *****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1029 aa Download sequence
MADGRRLGLT PQLDIEQILR EAQHRWLRPA EICEILRNYH KFRIAPEPQN KPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNE NFQRRSYWML 120 EEELMHIVLV HYREVKGGKS SYLQQREDGE SVRNSNPGSP ACSNSSVNLS QVPSQVSDYG 180 SPISTQHSEY EDADSDNYQS SSRYHSIPEM QQYGSWMNVQ LANTCAPAPT RLDHCDYPGV 240 QAAIPDFKSF TDARDSMTKV ENPSDAGFTY SGLSKKTDTA SWHEIMESCS TEFQTPFDLS 300 ISSKWATTSE DNPERNSFMN QDFLTGDIST HKEDGTTLLS NIVWQFSDNE AGSLVASSTT 360 VENSHATEES FNQPSDLSNK KSEGLTKNDS FSRWMSKELG EVDNSQINLN SGLFWSSLES 420 ESVVADSNLL NQEQLDAYLM GPSLSQDQLF SIIDFSPNWA YADLVTKVIV KGRFLVNEED 480 LQKYKWSCMF GEIEVPANIL ANGTLCCHAP PHKSGRVPFY ITCSNRVACS EIREFEYKLN 540 LPQIVGTNDL SNSTLLSRFE KLLLLDSVDY LIPDCGHLNE RSHADCTICS LIMKVDDEVI 600 DLFKHNPDED LLRIATKNRA LESQMKRKLH LWLLHKVGEG DGKGPNVLDK EGQGVLHLAA 660 ALGYDWAIKP TVAAGVNINF RDVHGWTAMH WAAFCGRERT IVTLIALDAS PGALTDPTPE 720 FPTGRTPADL ASQNGHKGIA GFLAESSLTN HLRALNLKNS ENQNLSKPYG LLGFENVSDK 780 INAHYLEGEI QTSLSAVRNA TEAAARIFQV FRVQSFNRKR IVEHSDEKYE MSDERALSLI 840 SLKPYKSGQH DTPVHAAAIK IQNKFRGWKG RKEFLITRQR IVKIQAHVRG HQVRKHYRKI 900 IWSVGIVEKV ILRWRRKGSG LRGFRSEELI EGQKNERVLN KEDDYDFLQV GRKQTEARME 960 KALARVKSMV QYPEARDQYR RLVTVVTELQ ESKLMQADSQ NEISGPSDAD FMMELEGLIG 1020 DYDIMPNQS

Sequence ? help Back to Top

Protein Sequence Length: 1029 aa Download sequence

MADGRRLGLT PQLDIEQILR EAQHRWLRPA EICEILRNYH KFRIAPEPQN KPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNE NFQRRSYWML  120
EEELMHIVLV HYREVKGGKS SYLQQREDGE SVRNSNPGSP ACSNSSVNLS QVPSQVSDYG  180
SPISTQHSEY EDADSDNYQS SSRYHSIPEM QQYGSWMNVQ LANTCAPAPT RLDHCDYPGV  240
QAAIPDFKSF TDARDSMTKV ENPSDAGFTY SGLSKKTDTA SWHEIMESCS TEFQTPFDLS  300
ISSKWATTSE DNPERNSFMN QDFLTGDIST HKEDGTTLLS NIVWQFSDNE AGSLVASSTT  360
VENSHATEES FNQPSDLSNK KSEGLTKNDS FSRWMSKELG EVDNSQINLN SGLFWSSLES  420
ESVVADSNLL NQEQLDAYLM GPSLSQDQLF SIIDFSPNWA YADLVTKVIV KGRFLVNEED  480
LQKYKWSCMF GEIEVPANIL ANGTLCCHAP PHKSGRVPFY ITCSNRVACS EIREFEYKLN  540
LPQIVGTNDL SNSTLLSRFE KLLLLDSVDY LIPDCGHLNE RSHADCTICS LIMKVDDEVI  600
DLFKHNPDED LLRIATKNRA LESQMKRKLH LWLLHKVGEG DGKGPNVLDK EGQGVLHLAA  660
ALGYDWAIKP TVAAGVNINF RDVHGWTAMH WAAFCGRERT IVTLIALDAS PGALTDPTPE  720
FPTGRTPADL ASQNGHKGIA GFLAESSLTN HLRALNLKNS ENQNLSKPYG LLGFENVSDK  780
INAHYLEGEI QTSLSAVRNA TEAAARIFQV FRVQSFNRKR IVEHSDEKYE MSDERALSLI  840
SLKPYKSGQH DTPVHAAAIK IQNKFRGWKG RKEFLITRQR IVKIQAHVRG HQVRKHYRKI  900
IWSVGIVEKV ILRWRRKGSG LRGFRSEELI EGQKNERVLN KEDDYDFLQV GRKQTEARME  960
KALARVKSMV QYPEARDQYR RLVTVVTELQ ESKLMQADSQ NEISGPSDAD FMMELEGLIG  1020
DYDIMPNQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	CAMTA family protein