PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678334.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

LBD

Protein Properties

Length: 269aa MW: 29172.9 Da PI: 7.676

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678334.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.6	1.5e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+d+++sl+yeA+ r+ +P+yG+vg+++++++ql+q+ XP_020678334.1 4 SCNGCRVLRKGCSDNCSIRPCLqwiknPEAQANATVFLAKFYGRAGLMNLINAGPEHVRPDIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQS 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e +l+++ XP_020678334.1 99 AVESVLRGS 107 *99988766 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MRMSCNGCRV LRKGCSDNCS IRPCLQWIKN PEAQANATVF LAKFYGRAGL MNLINAGPEH 60 VRPDIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQSAV ESVLRGSPIV SISSEAAESS 120 PAPPLKGYDI RHSSKEGGGY PVELHKVGKC RTRFKRAGAD AKTRAGVQVP APASPESSGR 180 HWCYAAPTRS HESAGSRPEN ESMFSVETVE ASHVSQGEPN HSEEGEMGLE LTLGLEPLSR 240 RRDDARWCGK TSPAAQEDYG ADLQLELAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-73	LBD family protein