![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020673109.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 188aa MW: 20269.3 Da PI: 7.3644 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.7 | 1e-43 | 22 | 121 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C++dC++apyfpa++p+kfa vhk+FGasnv+kll++l+ +r+da+sslvyeA+ar+rdPvyG+v+ i++lq+q++ l+a+la XP_020673109.1 22 PCAACKLLRRRCVQDCIFAPYFPADEPQKFATVHKVFGASNVSKLLQELSMVQRSDAVSSLVYEANARVRDPVYGCVASISSLQRQINLLHAQLA 116 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e XP_020673109.1 117 LAQAE 121 *9987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 188 aa Download sequence |
MEREGREMVA RKQGSGGAAV SPCAACKLLR RRCVQDCIFA PYFPADEPQK FATVHKVFGA 60 SNVSKLLQEL SMVQRSDAVS SLVYEANARV RDPVYGCVAS ISSLQRQINL LHAQLALAQA 120 EIVHLHLQNA ALFACTSTVA MAPLCSDATA SANTSQSVID SGNINEKTIF SIDMLLDHAN 180 IGLPMWSC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G31320.1 | 9e-61 | LBD family protein |