PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC7BG034560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LSD | ||||||||
Protein Properties | Length: 96aa MW: 10122.6 Da PI: 8.7774 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 22.5 | 1.9e-07 | 66 | 88 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gC l Y rGA +VRC+ C+ TRIDC7BG034560.1 66 CNGCFSLVLYNRGAANVRCSRCN 88 **********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence |
SSPSSLSSLI SLATYFFHLP LSPTHLSLSA SAIGASRLLG SLLGMPRCTS SVNYQTETAA 60 MSELICNGCF SLVLYNRGAA NVRCSRCNML NSTRSG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 4e-07 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC7BG034560.1 |