PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC7AG043290.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LSD | ||||||||
Protein Properties | Length: 107aa MW: 11544.2 Da PI: 8.0863 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 22 | 2.8e-07 | 42 | 66 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC l Y rGA +VRC+ C+ V TRIDC7AG043290.2 42 CNGCFSLVLYNRGAANVRCSGCNRV 66 **********************966 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence |
HLSLSASAIG ASRLLGSLLG MPRCTSSVNY QTETATMSEL ICNGCFSLVL YNRGAANVRC 60 SGCNRVNSTR SGTFPYIYIY IYIDPAISAT HTHQLCWCCC CNGVAFT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 1e-06 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC7AG043290.2 |