PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG055120.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 180aa MW: 19082.2 Da PI: 8.4941

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG055120.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	36.5	7.9e-12	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+ Cr +L+YP GApsV+Ca+C ++ TRIDC5AG055120.3 7 CHRCRRVLAYPSGAPSVCCAMCRAI 31 **********************986 PP
2	zf-LSD1	39.7	7.9e-13	48	72	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV TRIDC5AG055120.3 48 CGGCRTLLMYTRNADTVRCSCCSTV 72 ***********************99 PP
3	zf-LSD1	44.9	1.9e-14	86	109	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg Crt+L+YP GApsV+Ca+Cd TRIDC5AG055120.3 86 CGRCRTTLMYPHGAPSVKCAICDY 109 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
MQSQIVCHRC RRVLAYPSGA PSVCCAMCRA ITAVPPPAPA VEMAQLICGG CRTLLMYTRN 60 ADTVRCSCCS TVNLVRPVNN IAHVNCGRCR TTLMYPHGAP SVKCAICDYI TNITNTGINT 120 MSPAPCPRPT SNESAYNASS ASVPTPQPQN VTVVVENPMT VDEKGKLVSN VVVGITPGKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-45	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG055120.3