PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5AG007580.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LSD | ||||||||
Protein Properties | Length: 153aa MW: 16523.2 Da PI: 9.0412 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.9 | 7.7e-14 | 10 | 34 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y+r+A+ VRC++CdtV TRIDC5AG007580.3 10 CVGCRTLLMYTRNATTVRCSCCDTV 34 ************************9 PP | |||||||
2 | zf-LSD1 | 49.3 | 8e-16 | 51 | 75 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GA+sV+Ca+C+++ TRIDC5AG007580.3 51 CGQCQTVLMYPYGASSVKCAICNFI 75 ***********************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence |
QGMEMAQLIC VGCRTLLMYT RNATTVRCSC CDTVNLARPA PPVNSIAHVN CGQCQTVLMY 60 PYGASSVKCA ICNFITNIGM NTVRPLPPTM HAPNGISYSV PSTSAPSAQS QNVTVVVENP 120 MTVDDKGKLG EQRRSRGYVR REKVAKHVSA CTK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 4e-38 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5AG007580.3 |