PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG047480.10

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 155aa MW: 16162.2 Da PI: 8.0326

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG047480.10	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	44	3.7e-14	30	54	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV TRIDC1BG047480.10 30 CSGCRNLLMYPAGATSVCCAVCSTV 54 ***********************99 PP
2	zf-LSD1	46.7	5.3e-15	69	93	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV TRIDC1BG047480.10 69 CGGCHTLLMYIRGATSVQCSCCHTV 93 ************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence
MPVPLAPYPT PPVPFTPPAP NAGAQSQLVC SGCRNLLMYP AGATSVCCAV CSTVTAVPAP 60 GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLAMEGI STKAFISLSL PGLQVVYAAG 120 FDSLFETMLT LIRVCKTLLL SRMYSEVGKA LAISR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	1e-32	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG047480.10