PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G16487
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 1622aa    MW: 179595 Da    PI: 6.4035
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G16487genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001115931619123
                   EEET..TTTEEESSHHHHHHHHHH..T CS
      zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                   ykC+   Cg sF+  s++ rH r+  H
  Ro07_G16487 1593 YKCKvdGCGLSFRFVSDFSRHRRKtgH 1619
                   99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence    Length: 1622 aa     Download sequence    
MGDVKIPNWL EGLPLAPEFH PTHTEFADPI AYISKIEKEA SEFGICKIIP PLPKPSKRYV  60
FSNLNKSLAK RPELGSDVSS ENDCAPTKLG PGDGSNDGEV RAVFTTRHQE LGQTVKRAKV  120
ADLNPPSGVD KQVWQSGEVY TLEQFESKSR AFARSILGTI RDVSPLVIEA MFWKAASEKP  180
IYVEYANDVP GSAFEEPEGQ LCYSHRRRRK RNSYQRSGAN SDSKNSETIN SCERNSQNGE  240
VKDDSPKIVS DTCLEVSKSS ASPGIVSTDE TSQSSRKKNQ NSSCDMEGTA GWKLSNSPWN  300
LQVIARSPGS LTRFMPDDIP GVTSPMVYIG MLFSWFAWHV EDHELHSMNF LHNGSSKTWY  360
SVPGDYAFSF EELIRTEAYG GNADRLAALS LLGNKTTLMS PEVVIASGIP CCRLIQNPGE  420
FVVTFPRAYH VGFSHGFNCG EAANFGTPQW LKVAKEAAVR RAAMNYLPML SHQQLLYLST  480
MSFVSRVPRS LLPGVRSSRM RDRQKEDREL SVKKAFIEDI LNENDVLSAL LGKESSYRAV  540
LWNPDLLPCA SKESPIPTAS APVDTNSKEN ATDTQRGNST NDQNFLVDEM SLYMENLNDL  600
YLGSDDLSSD FQVDSGTLAC VACGILGFPF MSVVQPSEKA SMELQPEYFS AEEFPGVSGL  660
KNSHFSPEHR ESFKGCATED LPPISNAFPP AKDPLIPCTM KFNKGWNTVD KFLRPRSFCL  720
EHAVETLELL QHKGGANMLV ICHSDYQKIK APAAAIAEEI GCPFNYNEVP LDIASKEDLN  780
LIDLAVDDGR DECGEDWTSK LGINLRYCVK VRKSSSSKRV QHALALGGVF SKQSSSSEFL  840
TVKWTSRRSR TKKVYLDAPY KQCESIEKKK EVVEGRSADA TSFKREGKII QYSRRNKLKP  900
STSTVAGTVV EHPATSKERD KHSRRASGSI IYNNGKSSGS SIYNNGKSTS ICARLDSFAS  960
NSMSEMRPVV QMREATRDIC LDSTLSQVAD TLALTAGSAD AQIENHSLEE RNMNSGGCNL  1020
AARESDMQEE IKIPEEAREN KSITPLVIAR DARFEKHRDK QKTENLNKNC GNCNLVSEGQ  1080
SQLLAEEDVL TNGVSVFTKS TNLCAANSIV TNSEEQMVNA VIEKSCVNSE VCESMTLDAE  1140
VQQEIQTTDS SNDKAPVSCS STLLNDPTFT AAEGYVECLR GTHIAEAFSN VVSSEFKTEE  1200
DIKIPKGRNE EPSLSYTGRI SQLSPASTDG SSGVPRELCA AADFQPGPIS IGEEFQAADR  1260
SSEGEYISTS MIRMEETHPS FSLEESSVVR GSSLEESTSN GVTSATVVQQ DAQTPNEAME  1320
APSYNFVVRG ENQPIPVSVE DEIPRVTCAT DATLDDKERG TISYSNKELI ASHDTSKCEP  1380
SRVTIKTYFR VKRGTRAAQE LLNGSEVCIS QRDRELENIE SSIVDPRPSP QIESRRKRGV  1440
EQKMEDNFNF NGFIRGPCEG LRPRAGNDAT ISGIDIHNQD EEKQAAKKVK RPDVPVPPKD  1500
KKKEQARKSH SCNLGSCRMS FQTKEELMVH KRNRCPHEGC GKKFSCHKYA VVHSRVHEND  1560
RPFKCPWKGC SMSFKWAWAQ TEHIRVHTGE KPYKCKVDGC GLSFRFVSDF SRHRRKTGHY  1620
VS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein