PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G16487 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C2H2 | ||||||||
Protein Properties | Length: 1622aa MW: 179595 Da PI: 6.4035 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 1593 | 1619 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H Ro07_G16487 1593 YKCKvdGCGLSFRFVSDFSRHRRKtgH 1619 99*********************9777 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1622 aa Download sequence |
MGDVKIPNWL EGLPLAPEFH PTHTEFADPI AYISKIEKEA SEFGICKIIP PLPKPSKRYV 60 FSNLNKSLAK RPELGSDVSS ENDCAPTKLG PGDGSNDGEV RAVFTTRHQE LGQTVKRAKV 120 ADLNPPSGVD KQVWQSGEVY TLEQFESKSR AFARSILGTI RDVSPLVIEA MFWKAASEKP 180 IYVEYANDVP GSAFEEPEGQ LCYSHRRRRK RNSYQRSGAN SDSKNSETIN SCERNSQNGE 240 VKDDSPKIVS DTCLEVSKSS ASPGIVSTDE TSQSSRKKNQ NSSCDMEGTA GWKLSNSPWN 300 LQVIARSPGS LTRFMPDDIP GVTSPMVYIG MLFSWFAWHV EDHELHSMNF LHNGSSKTWY 360 SVPGDYAFSF EELIRTEAYG GNADRLAALS LLGNKTTLMS PEVVIASGIP CCRLIQNPGE 420 FVVTFPRAYH VGFSHGFNCG EAANFGTPQW LKVAKEAAVR RAAMNYLPML SHQQLLYLST 480 MSFVSRVPRS LLPGVRSSRM RDRQKEDREL SVKKAFIEDI LNENDVLSAL LGKESSYRAV 540 LWNPDLLPCA SKESPIPTAS APVDTNSKEN ATDTQRGNST NDQNFLVDEM SLYMENLNDL 600 YLGSDDLSSD FQVDSGTLAC VACGILGFPF MSVVQPSEKA SMELQPEYFS AEEFPGVSGL 660 KNSHFSPEHR ESFKGCATED LPPISNAFPP AKDPLIPCTM KFNKGWNTVD KFLRPRSFCL 720 EHAVETLELL QHKGGANMLV ICHSDYQKIK APAAAIAEEI GCPFNYNEVP LDIASKEDLN 780 LIDLAVDDGR DECGEDWTSK LGINLRYCVK VRKSSSSKRV QHALALGGVF SKQSSSSEFL 840 TVKWTSRRSR TKKVYLDAPY KQCESIEKKK EVVEGRSADA TSFKREGKII QYSRRNKLKP 900 STSTVAGTVV EHPATSKERD KHSRRASGSI IYNNGKSSGS SIYNNGKSTS ICARLDSFAS 960 NSMSEMRPVV QMREATRDIC LDSTLSQVAD TLALTAGSAD AQIENHSLEE RNMNSGGCNL 1020 AARESDMQEE IKIPEEAREN KSITPLVIAR DARFEKHRDK QKTENLNKNC GNCNLVSEGQ 1080 SQLLAEEDVL TNGVSVFTKS TNLCAANSIV TNSEEQMVNA VIEKSCVNSE VCESMTLDAE 1140 VQQEIQTTDS SNDKAPVSCS STLLNDPTFT AAEGYVECLR GTHIAEAFSN VVSSEFKTEE 1200 DIKIPKGRNE EPSLSYTGRI SQLSPASTDG SSGVPRELCA AADFQPGPIS IGEEFQAADR 1260 SSEGEYISTS MIRMEETHPS FSLEESSVVR GSSLEESTSN GVTSATVVQQ DAQTPNEAME 1320 APSYNFVVRG ENQPIPVSVE DEIPRVTCAT DATLDDKERG TISYSNKELI ASHDTSKCEP 1380 SRVTIKTYFR VKRGTRAAQE LLNGSEVCIS QRDRELENIE SSIVDPRPSP QIESRRKRGV 1440 EQKMEDNFNF NGFIRGPCEG LRPRAGNDAT ISGIDIHNQD EEKQAAKKVK RPDVPVPPKD 1500 KKKEQARKSH SCNLGSCRMS FQTKEELMVH KRNRCPHEGC GKKFSCHKYA VVHSRVHEND 1560 RPFKCPWKGC SMSFKWAWAQ TEHIRVHTGE KPYKCKVDGC GLSFRFVSDF SRHRRKTGHY 1620 VS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 0.0 | C2H2 family protein |