PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G15511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C2H2 | ||||||||
Protein Properties | Length: 272aa MW: 30103.8 Da PI: 10.0184 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00074 | 35 | 57 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H+ H Ro06_G15511 35 YTCRLCSRAFPTTQALGGHQTAH 57 9***************9999877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence |
MSMTSAEILT NQNMEDPLIP ASMSWSSESS SLDLYTCRLC SRAFPTTQAL GGHQTAHRKE 60 KIERLIRIQR QAEIDELKYA ADNDLLLSPE PISWAPPATD DQTLKVSNFM PMGNGTSPVP 120 GSGLESVQGL GVGSSGCSEN KASDDSDQKK HKKRKSAAKL SECLENKASG DSDQKKQKKR 180 KSAAKLSECS ENKASDDSDQ KKQKKRKTIK LSECLENMAS DADQKKQKKR KTTKFSEFSE 240 INKASDADKK KQKKRKSTKS NFDPKYSNAN KS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 181 | KKRKSAAKLSECLENKASGDSDQKKQKKRK |
2 | 178 | 207 | KKRKSAAKLSECLENKASGDSDQKKQKKRK |
3 | 204 | 233 | KKRKSAAKLSECLENKASGDSDQKKQKKRK |
4 | 204 | 229 | KKRKTIKLSECLENMASDADQKKQKK |
5 | 228 | 257 | KKRKSAAKLSECLENKASGDSDQKKQKKRK |
6 | 228 | 253 | KKRKTIKLSECLENMASDADQKKQKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05120.1 | 2e-08 | C2H2 family protein |