PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G15511
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 272aa    MW: 30103.8 Da    PI: 10.0184
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G15511genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000743557123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C  C++ F++   L  H+  H
  Ro06_G15511 35 YTCRLCSRAFPTTQALGGHQTAH 57
                 9***************9999877 PP

Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MSMTSAEILT NQNMEDPLIP ASMSWSSESS SLDLYTCRLC SRAFPTTQAL GGHQTAHRKE  60
KIERLIRIQR QAEIDELKYA ADNDLLLSPE PISWAPPATD DQTLKVSNFM PMGNGTSPVP  120
GSGLESVQGL GVGSSGCSEN KASDDSDQKK HKKRKSAAKL SECLENKASG DSDQKKQKKR  180
KSAAKLSECS ENKASDDSDQ KKQKKRKTIK LSECLENMAS DADQKKQKKR KTTKFSEFSE  240
INKASDADKK KQKKRKSTKS NFDPKYSNAN KS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152181KKRKSAAKLSECLENKASGDSDQKKQKKRK
2178207KKRKSAAKLSECLENKASGDSDQKKQKKRK
3204233KKRKSAAKLSECLENKASGDSDQKKQKKRK
4204229KKRKTIKLSECLENMASDADQKKQKK
5228257KKRKSAAKLSECLENKASGDSDQKKQKKRK
6228253KKRKTIKLSECLENMASDADQKKQKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.12e-08C2H2 family protein