PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G02167

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 383aa MW: 42794.4 Da PI: 8.4559

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G02167	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8e-05	55	75	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+ksF++ +L H+++H Ro03_G02167 55 CHVCKKSFPSLKSLYGHMKLH 75 *******************99 PP
2	zf-C2H2	12.7	0.00038	302	324	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F++ L H ++H Ro03_G02167 302 FVCNICNKKFTSFQALGGHRSVH 324 89**********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MKNLPERNPQ EDEDQESRDN NDDDEDEQRG RKIHYNDSLP LKKRMKQHGN EIPHCHVCKK 60 SFPSLKSLYG HMKLHGGSNS KAFKPPSPKL DSSVDGVSSS CNDNIDTDTN AASLLVNLAK 120 IEIRRHGISE QSYYWETSTN PDGLGDQMSG KKAMQEPSVR YKDNPSSKKL KFDGTSTTGA 180 VLAPRKGKRK ASMEDDENGD EIRVLNQLTS NTPKKIKIVF RGEDPKRDVA LHDETQKLQI 240 PRKPQVESSK TLPTSQAMGT RSWNSSRNKS DGTSAKMGES GFSTKYAAKR KYNPVEHNIK 300 QFVCNICNKK FTSFQALGGH RSVHNSKGLP VKEAPTAPEV RASTDNEDDE TEAALHEEAR 360 DDAKGRRQKD FDLNQLPDED GTA

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MKNLPERNPQ EDEDQESRDN NDDDEDEQRG RKIHYNDSLP LKKRMKQHGN EIPHCHVCKK  60
SFPSLKSLYG HMKLHGGSNS KAFKPPSPKL DSSVDGVSSS CNDNIDTDTN AASLLVNLAK  120
IEIRRHGISE QSYYWETSTN PDGLGDQMSG KKAMQEPSVR YKDNPSSKKL KFDGTSTTGA  180
VLAPRKGKRK ASMEDDENGD EIRVLNQLTS NTPKKIKIVF RGEDPKRDVA LHDETQKLQI  240
PRKPQVESSK TLPTSQAMGT RSWNSSRNKS DGTSAKMGES GFSTKYAAKR KYNPVEHNIK  300
QFVCNICNKK FTSFQALGGH RSVHNSKGLP VKEAPTAPEV RASTDNEDDE TEAALHEEAR  360
DDAKGRRQKD FDLNQLPDED GTA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	2e-07	C2H2 family protein