PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G02167
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 383aa    MW: 42794.4 Da    PI: 8.4559
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G02167genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-055575323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C+ C+ksF++  +L  H+++H
  Ro03_G02167 55 CHVCKKSFPSLKSLYGHMKLH 75
                 *******************99 PP

2zf-C2H212.70.00038302324123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F++   L  H ++H
  Ro03_G02167 302 FVCNICNKKFTSFQALGGHRSVH 324
                  89**********99999998887 PP

Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    
MKNLPERNPQ EDEDQESRDN NDDDEDEQRG RKIHYNDSLP LKKRMKQHGN EIPHCHVCKK  60
SFPSLKSLYG HMKLHGGSNS KAFKPPSPKL DSSVDGVSSS CNDNIDTDTN AASLLVNLAK  120
IEIRRHGISE QSYYWETSTN PDGLGDQMSG KKAMQEPSVR YKDNPSSKKL KFDGTSTTGA  180
VLAPRKGKRK ASMEDDENGD EIRVLNQLTS NTPKKIKIVF RGEDPKRDVA LHDETQKLQI  240
PRKPQVESSK TLPTSQAMGT RSWNSSRNKS DGTSAKMGES GFSTKYAAKR KYNPVEHNIK  300
QFVCNICNKK FTSFQALGGH RSVHNSKGLP VKEAPTAPEV RASTDNEDDE TEAALHEEAR  360
DDAKGRRQKD FDLNQLPDED GTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-07C2H2 family protein