PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G02459

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 293aa MW: 31858.2 Da PI: 8.1178

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G02459	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	112	134	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Ro02_G02459 112 FSCNYCQRKFYSSQALGGHQNAH 134 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MEPIRSRNAI STNSIPPEAP PSPNTPLQDP NESKPKLVVV EDQDEEEIEE VNHPNTILLL 60 DLELSSTSKD STTSNSSGFN PELNLLDCLQ MGGSSSESSP RDQAGAAEPR VFSCNYCQRK 120 FYSSQALGGH QNAHKRERTL AKRGQRQLVA SAAAAAGFGG YPYFHHHNHP YFASMASLPL 180 HGAYNNNNKN KSLDIQVHSM VHKPNGMGSI GFGNSYGNRG YKSSRPIFDQ QPAIGKLAPQ 240 NIQNPSASRG STTSSSTSVG RFDMANVGWL GNGSRFRSGQ QEEMNKLDLS LKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	4e-36	C2H2 family protein