PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ro02_G02459 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 293aa MW: 31858.2 Da PI: 8.1178 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 112 | 134 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Ro02_G02459 112 FSCNYCQRKFYSSQALGGHQNAH 134 89*****************9988 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 293 aa Download sequence |
MEPIRSRNAI STNSIPPEAP PSPNTPLQDP NESKPKLVVV EDQDEEEIEE VNHPNTILLL 60 DLELSSTSKD STTSNSSGFN PELNLLDCLQ MGGSSSESSP RDQAGAAEPR VFSCNYCQRK 120 FYSSQALGGH QNAHKRERTL AKRGQRQLVA SAAAAAGFGG YPYFHHHNHP YFASMASLPL 180 HGAYNNNNKN KSLDIQVHSM VHKPNGMGSI GFGNSYGNRG YKSSRPIFDQ QPAIGKLAPQ 240 NIQNPSASRG STTSSSTSVG RFDMANVGWL GNGSRFRSGQ QEEMNKLDLS LKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G10970.1 | 4e-36 | C2H2 family protein |