PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G02253

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 432aa MW: 46624.6 Da PI: 9.7531

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G02253	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.6e-05	194	216	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg+ F+ ++L+ H++ H Ro02_G02253 194 ACPQCGEIFPKMESLELHQSIrH 216 6******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MALLTFQPES TQPKKKKKQQ QQPPPPPPPS KRSSQKHSSK KQPPPQKPPS SSSSWDQIKN 60 LLTCKQMEGS RVHDPSKNAV GYSKLGSSCG SICSFKDVVH GNTSRVVHRA DNSPDSSSLG 120 QETGLLGRKL VNGSSNRSGS GSGSTTRSNR GGAAAYTSSN SSRGMQFRKL SGCYECHYIV 180 DPSRYPVPRS TICACPQCGE IFPKMESLEL HQSIRHAVSE LGVEDSGRNI VEIIFKSSWL 240 KKDSPICKIE RILKVQNTQR TIQRFEDCRD AVKNRALNST RKNPRCAADG NELLRFHCTS 300 ISCTLGARGS SNLCGSVPGC GVCTTIRHGF QGEVGKGVRT TASSGRAHDS LHCTDGRRAM 360 LVCRVIAGRV RRIADDAAAD EDAALTSSTA SGGSYDSVAG YAGVYSNLEE LVVFNPRAIL 420 PCFVVIYKAL DS

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MALLTFQPES TQPKKKKKQQ QQPPPPPPPS KRSSQKHSSK KQPPPQKPPS SSSSWDQIKN  60
LLTCKQMEGS RVHDPSKNAV GYSKLGSSCG SICSFKDVVH GNTSRVVHRA DNSPDSSSLG  120
QETGLLGRKL VNGSSNRSGS GSGSTTRSNR GGAAAYTSSN SSRGMQFRKL SGCYECHYIV  180
DPSRYPVPRS TICACPQCGE IFPKMESLEL HQSIRHAVSE LGVEDSGRNI VEIIFKSSWL  240
KKDSPICKIE RILKVQNTQR TIQRFEDCRD AVKNRALNST RKNPRCAADG NELLRFHCTS  300
ISCTLGARGS SNLCGSVPGC GVCTTIRHGF QGEVGKGVRT TASSGRAHDS LHCTDGRRAM  360
LVCRVIAGRV RRIADDAAAD EDAALTSSTA SGGSYDSVAG YAGVYSNLEE LVVFNPRAIL  420
PCFVVIYKAL DS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-171	C2H2 family protein