PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G01401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C2H2 | ||||||||
Protein Properties | Length: 431aa MW: 47418.5 Da PI: 9.653 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00032 | 200 | 222 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg F +nL+ H+ + H Ro02_G01401 200 SCPECGAIFMKAENLELHQAVrH 222 8******************9888 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence |
MSATMANLKS QRKPTKQTHQ KIKKQNQNQN HQKPEIKPPY WTVVRGLLTC KHLHAVQLLQ 60 QEGKQQPQKQ QNEQLAAMEE MSAAKKCKKM RCSGSLCSNT KITHRPELGS PEVHKKRASS 120 MGSSSITNET SSRSMKAPLH ELNGVVSTSS SSLSSNISSA GGSFRAMPFR RFSGCYECRM 180 VVDPVLGFAR DPSLRGSICS CPECGAIFMK AENLELHQAV RHAVSELGPE DTSKNIVEII 240 FQSSWLKKQA PICKIDRILK VHNTQKTISK FEEYRDAIKA KATPNKKHPR CIADGNELLR 300 FHCTTLDCSL GLNGSSNLCN SIPNCNVCSI IKNGFRVVDR SELIGNNGIL TTATSGRAHD 360 MVSEDGGGEK RRAMLVCRVI AGRVKKNMEG GGTEEYDSVA GAVGVYSNLD ELYVFNPKAI 420 LPCFVVIYGG F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-103 | C2H2 family protein |