PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G01401
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 431aa    MW: 47418.5 Da    PI: 9.653
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G01401genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00032200222223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp Cg  F   +nL+ H+ + H
  Ro02_G01401 200 SCPECGAIFMKAENLELHQAVrH 222
                  8******************9888 PP

Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    
MSATMANLKS QRKPTKQTHQ KIKKQNQNQN HQKPEIKPPY WTVVRGLLTC KHLHAVQLLQ  60
QEGKQQPQKQ QNEQLAAMEE MSAAKKCKKM RCSGSLCSNT KITHRPELGS PEVHKKRASS  120
MGSSSITNET SSRSMKAPLH ELNGVVSTSS SSLSSNISSA GGSFRAMPFR RFSGCYECRM  180
VVDPVLGFAR DPSLRGSICS CPECGAIFMK AENLELHQAV RHAVSELGPE DTSKNIVEII  240
FQSSWLKKQA PICKIDRILK VHNTQKTISK FEEYRDAIKA KATPNKKHPR CIADGNELLR  300
FHCTTLDCSL GLNGSSNLCN SIPNCNVCSI IKNGFRVVDR SELIGNNGIL TTATSGRAHD  360
MVSEDGGGEK RRAMLVCRVI AGRVKKNMEG GGTEEYDSVA GAVGVYSNLD ELYVFNPKAI  420
LPCFVVIYGG F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-103C2H2 family protein