PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0240061

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MIKC_MADS

Protein Properties

Length: 349aa MW: 39227.7 Da PI: 5.2205

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0240061	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.9	5.7e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s RcHm_v2.0_Chr7g0240061 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP
2	K-box	26.1	3.7e-10	121	191	9	79
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 + +++ e+lqqe+ L++++++ + ++R + + L+ s+ eL++ e+ L + l+++ ++K+ ll +q++ RcHm_v2.0_Chr7g0240061 121 AVSSEIEELQQEIGGLQQQVRMAEDQIRIYEPDPLKITSMAELESSEKSLVDTLSRVTQRKEYLLSNQLSS 191 457889**************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK 60 RRIEDVFTRY INLPDQEREH AIIFPDHNKH PDLQNKEYLL RILQQLRSDN DFALQLANPT 120 AVSSEIEELQ QEIGGLQQQV RMAEDQIRIY EPDPLKITSM AELESSEKSL VDTLSRVTQR 180 KEYLLSNQLS SFDSSGIQQM LPGSFENEVA GWLANGGHNH TQIYDASAPL DHQLRNLSSS 240 LYDPFSQGTS SNGGADPSSM GECHVSVTNG SDGELPPWPQ PYTSSGHHST LMQPSLMPQY 300 QAMVSSNMPE IIPHEQVEIP VSSSNVQAYN EGADNYHDQN NKVPQLNGH

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK  60
RRIEDVFTRY INLPDQEREH AIIFPDHNKH PDLQNKEYLL RILQQLRSDN DFALQLANPT  120
AVSSEIEELQ QEIGGLQQQV RMAEDQIRIY EPDPLKITSM AELESSEKSL VDTLSRVTQR  180
KEYLLSNQLS SFDSSGIQQM LPGSFENEVA GWLANGGHNH TQIYDASAPL DHQLRNLSSS  240
LYDPFSQGTS SNGGADPSSM GECHVSVTNG SDGELPPWPQ PYTSSGHHST LMQPSLMPQY  300
QAMVSSNMPE IIPHEQVEIP VSSSNVQAYN EGADNYHDQN NKVPQLNGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-118	MIKC_MADS family protein