PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0169071

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 459aa MW: 52154 Da PI: 8.9908

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0169071	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.8	3.7e-15	113	172	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g RcHm_v2.0_Chr2g0169071 113 SRFRGVSRHRWTGRFEAHLWDkLSWNItqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 172 789****************888855655447***********************98 PP
2	AP2	52.1	1.7e-16	215	266	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g RcHm_v2.0_Chr2g0169071 215 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 266 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MKLYIHSKHP SNSGSHRKEE QALSFNRKER KFRKFICLQE MDQQLMMVKN EETPAGRRRL 60 STADREANQA ARCVKRRRRD PAAVAVDISK SELPLPEKPA DPASAATTMK RSSRFRGVSR 120 HRWTGRFEAH LWDKLSWNIT QKKKGKQVYL GAYDEEESAA RAYDLAALKY WGTSTFTNFP 180 ISDYENEIEI MQSVTKEEYL ASLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK 240 YLYLGTYSTQ EEAARAYDIA AIEYRGINAV TNFDLSSYIR WLKPKVDSTI AAQELETVAE 300 PENIPFMASN YIPTEESPLS HTNPFASDYL TSPKQEVSRS NVPLDSSSKS SSPTALGLLL 360 QSSIFRELVQ KNSNYSEDES TDGEEQKNQA QGGSDDEYGG PFSYERIGAN SPFVSSTNRE 420 SIELQERELL HSPWNSFAST MLLNQTTKAD ASESLFFFS

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MKLYIHSKHP SNSGSHRKEE QALSFNRKER KFRKFICLQE MDQQLMMVKN EETPAGRRRL  60
STADREANQA ARCVKRRRRD PAAVAVDISK SELPLPEKPA DPASAATTMK RSSRFRGVSR  120
HRWTGRFEAH LWDKLSWNIT QKKKGKQVYL GAYDEEESAA RAYDLAALKY WGTSTFTNFP  180
ISDYENEIEI MQSVTKEEYL ASLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK  240
YLYLGTYSTQ EEAARAYDIA AIEYRGINAV TNFDLSSYIR WLKPKVDSTI AAQELETVAE  300
PENIPFMASN YIPTEESPLS HTNPFASDYL TSPKQEVSRS NVPLDSSSKS SSPTALGLLL  360
QSSIFRELVQ KNSNYSEDES TDGEEQKNQA QGGSDDEYGG PFSYERIGAN SPFVSSTNRE  420
SIELQERELL HSPWNSFAST MLLNQTTKAD ASESLFFFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	79	RRRLSTADREANQAARCVKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-95	AP2 family protein