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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0169071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | AP2 | ||||||||
Protein Properties | Length: 459aa MW: 52154 Da PI: 8.9908 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.8 | 3.7e-15 | 113 | 172 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g RcHm_v2.0_Chr2g0169071 113 SRFRGVSRHRWTGRFEAHLWDkLSWNItqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 172 789******************888855655447*************************98 PP | |||||||
2 | AP2 | 52.1 | 1.7e-16 | 215 | 266 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g RcHm_v2.0_Chr2g0169071 215 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 266 89****99**********99966...3.6*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence |
MKLYIHSKHP SNSGSHRKEE QALSFNRKER KFRKFICLQE MDQQLMMVKN EETPAGRRRL 60 STADREANQA ARCVKRRRRD PAAVAVDISK SELPLPEKPA DPASAATTMK RSSRFRGVSR 120 HRWTGRFEAH LWDKLSWNIT QKKKGKQVYL GAYDEEESAA RAYDLAALKY WGTSTFTNFP 180 ISDYENEIEI MQSVTKEEYL ASLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK 240 YLYLGTYSTQ EEAARAYDIA AIEYRGINAV TNFDLSSYIR WLKPKVDSTI AAQELETVAE 300 PENIPFMASN YIPTEESPLS HTNPFASDYL TSPKQEVSRS NVPLDSSSKS SSPTALGLLL 360 QSSIFRELVQ KNSNYSEDES TDGEEQKNQA QGGSDDEYGG PFSYERIGAN SPFVSSTNRE 420 SIELQERELL HSPWNSFAST MLLNQTTKAD ASESLFFFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 79 | RRRLSTADREANQAARCVKRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-95 | AP2 family protein |