PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0169071
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 459aa    MW: 52154 Da    PI: 8.9908
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0169071genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.7e-15113172155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  RcHm_v2.0_Chr2g0169071 113 SRFRGVSRHRWTGRFEAHLWDkLSWNItqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 172
                             789******************888855655447*************************98 PP

2AP252.11.7e-16215266155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  RcHm_v2.0_Chr2g0169071 215 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 266
                             89****99**********99966...3.6*************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    
MKLYIHSKHP SNSGSHRKEE QALSFNRKER KFRKFICLQE MDQQLMMVKN EETPAGRRRL  60
STADREANQA ARCVKRRRRD PAAVAVDISK SELPLPEKPA DPASAATTMK RSSRFRGVSR  120
HRWTGRFEAH LWDKLSWNIT QKKKGKQVYL GAYDEEESAA RAYDLAALKY WGTSTFTNFP  180
ISDYENEIEI MQSVTKEEYL ASLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK  240
YLYLGTYSTQ EEAARAYDIA AIEYRGINAV TNFDLSSYIR WLKPKVDSTI AAQELETVAE  300
PENIPFMASN YIPTEESPLS HTNPFASDYL TSPKQEVSRS NVPLDSSSKS SSPTALGLLL  360
QSSIFRELVQ KNSNYSEDES TDGEEQKNQA QGGSDDEYGG PFSYERIGAN SPFVSSTNRE  420
SIELQERELL HSPWNSFAST MLLNQTTKAD ASESLFFFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15779RRRLSTADREANQAARCVKRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-95AP2 family protein