PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0145271
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 577aa    MW: 63794.1 Da    PI: 6.009
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0145271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.5e-15258317155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e Aaka++ a++k++g
  RcHm_v2.0_Chr2g0145271 258 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEERAAKAYDLAALKYWG 317
                             78*******************655454478446*************************98 PP
2AP248.12.9e-15360411155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  RcHm_v2.0_Chr2g0145271 360 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 411
                             78****************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    
MSNWLGFSLT PHLRIHEGFD GREEDQQEQD HGVVGFPPHM SVMPLRSDGS LCFAADPFRR  60
PNGSEDWRSY ENSMVGATSV TNPVDDDEEG PKLEDFLGSC YSNSPPGDET KVYCQNQEDS  120
KINVNEAPNF SNPNSEIEAN STDPSHHQSL IQPYSHYYAN PQSGGALVPC TNGMYKSWLG  180
QTVVVPYADV KSPSDQENGS NNFQSNLSLT MSPTLQNGGM LPISQVQMVE SKKRPGGKSS  240
AREPVTRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CRKEGQTRKG RQVYLGGYDK  300
EERAAKAYDL AALKYWGPTT HINFPISTYV KELEEMKTMT RQEFVANLRR KSSGFSRGAS  360
VYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GTSAVTNFDM  420
SRYDVKRICS SSTLITSDLA KRPSPKDPAP AAPNDQEFNS CASSTSSQPL LAITNSEEPC  480
DENLAEMVWN DNPNSEANTV TLAAASGSRN SSCPQSPKCC EFGSNSEFGL SVGDYSHAYF  540
SSLQGAKYED GNGGSDHSRL GNLGLVQQVP MFALWND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-120AP2 family protein