PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0108831

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 660aa MW: 73731.4 Da PI: 7.0379

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0108831	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.7	1.9e-15	331	390	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +++Aa+a++ a++k++g RcHm_v2.0_Chr2g0108831 331 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEQKAARAYDLAALKYWG 390 78*****************988886678446******99***********98 PP
2	AP2	46	1.3e-14	435	484	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g RcHm_v2.0_Chr2g0108831 435 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 484 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence
MKSMSNDNTN SSNNWLDFSL SPNMKMDVPH PPSDPHHQIS QSSSPSIPNA FFNSPPHFNY 60 GIYYGVDQGD HTGLYSALPM MPIKSDGSLC IMEALNRSHH PQGMGTSSSS STPKLEDFFG 120 GATMGTHNHY DNNDREALSL DSMFYQQIPT HHHHHEPNNN SQNLLNQEHE SQQQHFSSYY 180 SGLKTHEMMF EDHQKQQAQI EHYNNVQNPS MGSLNHSISD MKNWVPRNFS ANNNQGVLEQ 240 NMIGCMGDNG AESAGSIGSM PYGDLQCLSL SMSPGSQSSC VTGSQQISPT LTTNTDCVVA 300 MDSSKKRGPE KVEQKQIVHR KSLDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQS 360 RKGRQVYLGG YDMEQKAARA YDLAALKYWG PSTHINFPLE NYQKELEEMK NMSRQEYVAH 420 LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI 480 KFRGLNAVTN FDITRYDVDR IMASNTLLAG DNAKRNKVLP RPSEEATNQI SNGEQSITVA 540 VKDTNEVEEW KMMQLFQSSQ QVVDHQNVIQ ADHRAEESAT MGTTTHLSNT SSLVTSLSSS 600 REGSPDKSSQ PSFFGMPPTA SKFFSSSGTN NTVSSWIPAV QSRPGLSLPH MPIFAAWTDA

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence

MKSMSNDNTN SSNNWLDFSL SPNMKMDVPH PPSDPHHQIS QSSSPSIPNA FFNSPPHFNY  60
GIYYGVDQGD HTGLYSALPM MPIKSDGSLC IMEALNRSHH PQGMGTSSSS STPKLEDFFG  120
GATMGTHNHY DNNDREALSL DSMFYQQIPT HHHHHEPNNN SQNLLNQEHE SQQQHFSSYY  180
SGLKTHEMMF EDHQKQQAQI EHYNNVQNPS MGSLNHSISD MKNWVPRNFS ANNNQGVLEQ  240
NMIGCMGDNG AESAGSIGSM PYGDLQCLSL SMSPGSQSSC VTGSQQISPT LTTNTDCVVA  300
MDSSKKRGPE KVEQKQIVHR KSLDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQS  360
RKGRQVYLGG YDMEQKAARA YDLAALKYWG PSTHINFPLE NYQKELEEMK NMSRQEYVAH  420
LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI  480
KFRGLNAVTN FDITRYDVDR IMASNTLLAG DNAKRNKVLP RPSEEATNQI SNGEQSITVA  540
VKDTNEVEEW KMMQLFQSSQ QVVDHQNVIQ ADHRAEESAT MGTTTHLSNT SSLVTSLSSS  600
REGSPDKSSQ PSFFGMPPTA SKFFSSSGTN NTVSSWIPAV QSRPGLSLPH MPIFAAWTDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-131	AP2 family protein