PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0331141
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 401aa    MW: 44887.5 Da    PI: 5.0887
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0331141genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.83.1e-1459118155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  s+n    k+ ++++lg +++++ Aa  ++ a++k++g
  RcHm_v2.0_Chr1g0331141  59 SIYRGVTRHRWTGRYEAHLWDkTSWNDiqkKKgRQVYLGAYDSEDAAAHTYDLAALKYWG 118
                             57*******************777788885447**********99*************98 PP

2AP250.93.8e-16161212155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV +++ +grW+A+I  +     +k+ +lg++ t eeAa+a++ a+ +++g
  RcHm_v2.0_Chr1g0331141 161 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYNTQEEAAAAYDVAAIEYRG 212
                             89****99**********988422...5*************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    
MKRSPSYSCS SSSSSSSSSC AGPEIPTTLK QSDKPKPKRS RKTHKNSAEK CPDSGGRSSI  60
YRGVTRHRWT GRYEAHLWDK TSWNDIQKKK GRQVYLGAYD SEDAAAHTYD LAALKYWGPE  120
TILNFPLETY TKELDEMQKV SKEEYLASLR RRSSGFSRGV SKYRGVARHH HNGRWEARIG  180
RVLGNKYLYL GTYNTQEEAA AAYDVAAIEY RGVNAVTNFD ISNYIDKLKS VEPQDPPPNV  240
AQEQVEVKQE VHQFQPQPQE QKEQQQEQEE EQILVSPNLQ YPHVVPCIES STTTMQDVMD  300
PTNDHQFQFN WNFLENLVPV PDIPLDNEPS ELPDLFGDLG FEENFDLMFG GASDVNLSGL  360
LDTEACGVQA AVPGNLDDIG SSPPSPSPSS TTTSVSCNYS V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-106AP2 family protein