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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0331141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | AP2 | ||||||||
Protein Properties | Length: 401aa MW: 44887.5 Da PI: 5.0887 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.8 | 3.1e-14 | 59 | 118 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ ++++lg +++++ Aa ++ a++k++g RcHm_v2.0_Chr1g0331141 59 SIYRGVTRHRWTGRYEAHLWDkTSWNDiqkKKgRQVYLGAYDSEDAAAHTYDLAALKYWG 118 57*******************777788885447**********99*************98 PP | |||||||
2 | AP2 | 50.9 | 3.8e-16 | 161 | 212 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + +k+ +lg++ t eeAa+a++ a+ +++g RcHm_v2.0_Chr1g0331141 161 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYNTQEEAAAAYDVAAIEYRG 212 89****99**********988422...5*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence |
MKRSPSYSCS SSSSSSSSSC AGPEIPTTLK QSDKPKPKRS RKTHKNSAEK CPDSGGRSSI 60 YRGVTRHRWT GRYEAHLWDK TSWNDIQKKK GRQVYLGAYD SEDAAAHTYD LAALKYWGPE 120 TILNFPLETY TKELDEMQKV SKEEYLASLR RRSSGFSRGV SKYRGVARHH HNGRWEARIG 180 RVLGNKYLYL GTYNTQEEAA AAYDVAAIEY RGVNAVTNFD ISNYIDKLKS VEPQDPPPNV 240 AQEQVEVKQE VHQFQPQPQE QKEQQQEQEE EQILVSPNLQ YPHVVPCIES STTTMQDVMD 300 PTNDHQFQFN WNFLENLVPV PDIPLDNEPS ELPDLFGDLG FEENFDLMFG GASDVNLSGL 360 LDTEACGVQA AVPGNLDDIG SSPPSPSPSS TTTSVSCNYS V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 1e-106 | AP2 family protein |