PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0331141

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 401aa MW: 44887.5 Da PI: 5.0887

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0331141	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.8	3.1e-14	59	118	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ ++++lg +++++ Aa ++ a++k++g RcHm_v2.0_Chr1g0331141 59 SIYRGVTRHRWTGRYEAHLWDkTSWNDiqkKKgRQVYLGAYDSEDAAAHTYDLAALKYWG 118 57*****************777788885447******99***********98 PP
2	AP2	50.9	3.8e-16	161	212	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + +k+ +lg++ t eeAa+a++ a+ +++g RcHm_v2.0_Chr1g0331141 161 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYNTQEEAAAAYDVAAIEYRG 212 89**99******988422...5***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MKRSPSYSCS SSSSSSSSSC AGPEIPTTLK QSDKPKPKRS RKTHKNSAEK CPDSGGRSSI 60 YRGVTRHRWT GRYEAHLWDK TSWNDIQKKK GRQVYLGAYD SEDAAAHTYD LAALKYWGPE 120 TILNFPLETY TKELDEMQKV SKEEYLASLR RRSSGFSRGV SKYRGVARHH HNGRWEARIG 180 RVLGNKYLYL GTYNTQEEAA AAYDVAAIEY RGVNAVTNFD ISNYIDKLKS VEPQDPPPNV 240 AQEQVEVKQE VHQFQPQPQE QKEQQQEQEE EQILVSPNLQ YPHVVPCIES STTTMQDVMD 300 PTNDHQFQFN WNFLENLVPV PDIPLDNEPS ELPDLFGDLG FEENFDLMFG GASDVNLSGL 360 LDTEACGVQA AVPGNLDDIG SSPPSPSPSS TTTSVSCNYS V

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MKRSPSYSCS SSSSSSSSSC AGPEIPTTLK QSDKPKPKRS RKTHKNSAEK CPDSGGRSSI  60
YRGVTRHRWT GRYEAHLWDK TSWNDIQKKK GRQVYLGAYD SEDAAAHTYD LAALKYWGPE  120
TILNFPLETY TKELDEMQKV SKEEYLASLR RRSSGFSRGV SKYRGVARHH HNGRWEARIG  180
RVLGNKYLYL GTYNTQEEAA AAYDVAAIEY RGVNAVTNFD ISNYIDKLKS VEPQDPPPNV  240
AQEQVEVKQE VHQFQPQPQE QKEQQQEQEE EQILVSPNLQ YPHVVPCIES STTTMQDVMD  300
PTNDHQFQFN WNFLENLVPV PDIPLDNEPS ELPDLFGDLG FEENFDLMFG GASDVNLSGL  360
LDTEACGVQA AVPGNLDDIG SSPPSPSPSS TTTSVSCNYS V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-106	AP2 family protein