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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX92543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 21683.4 Da PI: 4.9154 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.6 | 1.9e-42 | 31 | 130 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq q+++l+a+la++++ RDX92543.1 31 PCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRSDAVASMVYEAGARIRDPVYGCAGAICQLQTQVNELQAQLAKAQA 129 7**********************************************************************************************9987 PP DUF260 100 e 100 RDX92543.1 130 D 130 5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence |
MESDTNTPTS SPTFSHSSNS PSSPPLVVMS PCAACKILRR RCAEKCVLAP YFPPTEPAKF 60 TTAHRVFGAS NIIKFLQELP ESQRSDAVAS MVYEAGARIR DPVYGCAGAI CQLQTQVNEL 120 QAQLAKAQAD LVNMQFQQAN LVALICMEMA QTPQESPQQS VDNFFSSPSH SSGYQNNLNF 180 FEENSNNLNS LWEPLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-67 | LBD family protein |