PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON84816.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 253aa MW: 28883.9 Da PI: 9.0616

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON84816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.4	3.9e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e+ss PON84816.1 9 KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59 79***********************************************96 PP
2	K-box	73.8	4.8e-25	82	171	11	100
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 e+++++ ++e++ Lk+e+ Lq++q +l+G+dL+ LslkeL +LeqqL+++l +++++K++ll+eq+e+++ +e+++ en++Lr+++ee PON84816.1 82 EKTEKQDSKEVDVLKDEVARLQKKQLRLMGKDLNGLSLKELYHLEQQLNEGLMSVKERKERLLKEQLEQSRLQEQRATLENETLRRQIEE 171 55677899*******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAQELAILCD AEVAVIIFSN TGKLFEFSSS 60 GMKRTLSRYN KCVDYPDGAI VEKTEKQDSK EVDVLKDEVA RLQKKQLRLM GKDLNGLSLK 120 ELYHLEQQLN EGLMSVKERK ERLLKEQLEQ SRLQEQRATL ENETLRRQIE ELRCLFPRTE 180 CTVPSYLEYY PVEKKNSSAN QSVIGPDQAS NYAAEKGDSD TTLHLGLPTD VYRKRKAPEK 240 EMHSNDSGSN IGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	9e-75	MIKC_MADS family protein