PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON68879.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 412aa MW: 45470.3 Da PI: 6.3735

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON68879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +vkq+G g W++ +++ + R++k+c++rw +yl PON68879.1 14 KGAWTAEEDQRLLSYVKQHGEGGWRSLPHKADLLRCGKSCRLRWANYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	52	1.6e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE+e ++++++ lG++ W+tIar++ +Rt++++k++w++ PON68879.1 67 RGEFSPEEEETIIRLHANLGNR-WSTIARHLY-RRTDNEVKNYWNT 110 899*****************.****9.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MGRTPWCDQK GLRKGAWTAE EDQRLLSYVK QHGEGGWRSL PHKADLLRCG KSCRLRWANY 60 LRPNIRRGEF SPEEEETIIR LHANLGNRWS TIARHLYRRT DNEVKNYWNT RLKRRVEAEV 120 RKCKDHPKIL RKTSNNDDIN PIIINSSSLV SSDDDSTSAN SDTFSGVTKD CSITSSSTTT 180 TSHGVTEPLS TTSADVLNQG VTNLVTTNTS STISQCFHKN NNAWETKLLS ESSHVNKSTN 240 STSITSINCI CDDHLDHDQV SRSANSTSSA HRVLLNKIAS KLALINLDKI IRSGGSGGYS 300 SLESSLASNS TPSVKDNSST DVVADLLEEV VQTGISAVCG TSGEELCQQG LEIFDFGDLT 360 LEANNNFLVE KTTAANYYNA KEGDDNTTTY SLDQLLLTSF PKDCLEDLIG HL

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MGRTPWCDQK GLRKGAWTAE EDQRLLSYVK QHGEGGWRSL PHKADLLRCG KSCRLRWANY  60
LRPNIRRGEF SPEEEETIIR LHANLGNRWS TIARHLYRRT DNEVKNYWNT RLKRRVEAEV  120
RKCKDHPKIL RKTSNNDDIN PIIINSSSLV SSDDDSTSAN SDTFSGVTKD CSITSSSTTT  180
TSHGVTEPLS TTSADVLNQG VTNLVTTNTS STISQCFHKN NNAWETKLLS ESSHVNKSTN  240
STSITSINCI CDDHLDHDQV SRSANSTSSA HRVLLNKIAS KLALINLDKI IRSGGSGGYS  300
SLESSLASNS TPSVKDNSST DVVADLLEEV VQTGISAVCG TSGEELCQQG LEIFDFGDLT  360
LEANNNFLVE KTTAANYYNA KEGDDNTTTY SLDQLLLTSF PKDCLEDLIG HL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60890.1	7e-58	MYB family protein