PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON68877.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 460aa MW: 49972.3 Da PI: 5.5045

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON68877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd++lv +++q G g W+t +++ g+ R++k+c++rw +yl PON68877.1 14 KGSWTTEEDQKLVAYITQNGEGGWRTLPQKAGLLRCGKSCRLRWTNYL 61 799***************************99**********97 PP
2	Myb_DNA-binding	46	1.3e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++ +E+e +++++ G++ W+tIa+ ++ +Rt++++k++w++ PON68877.1 67 RGDFSRQEEETIIRLHSVIGNK-WSTIAKQLP-RRTDNEIKNHWNT 110 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MGRAPCCNVQ GLKKGSWTTE EDQKLVAYIT QNGEGGWRTL PQKAGLLRCG KSCRLRWTNY 60 LRSGIKRGDF SRQEEETIIR LHSVIGNKWS TIAKQLPRRT DNEIKNHWNT RLKRLVAEKG 120 IDHFLTSTDT ESAVAKHDIG NNAETDTETE ESPENKLKVI ESKESVSTSC HLLNEVASKF 180 KADGTLASLI GQQNEKSKST EEGSSVSSHT TTSAYLLNKV ATNLNSPRSN SPGSIKAIFS 240 KSLDGSTTSG SSANSVSEFG TIIGNSSDVG SPRSENSVQV STPVSSSARL LNKMAAKFAL 300 MNRLQAMLGD KNQPSVSGNS IDDCTRSGSD GGSSLKTESQ TSEPSPFPDF FHFDGVLGIC 360 RGETCNQLDL AIHHDQALPV EVADDQREKV KLKDGTFDKE SGSFSNGIDL DEQVSVFTNT 420 STTSYDGSSP VEMIVSDLEA ASNWCHCIYF DEFLDAAILD

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MGRAPCCNVQ GLKKGSWTTE EDQKLVAYIT QNGEGGWRTL PQKAGLLRCG KSCRLRWTNY  60
LRSGIKRGDF SRQEEETIIR LHSVIGNKWS TIAKQLPRRT DNEIKNHWNT RLKRLVAEKG  120
IDHFLTSTDT ESAVAKHDIG NNAETDTETE ESPENKLKVI ESKESVSTSC HLLNEVASKF  180
KADGTLASLI GQQNEKSKST EEGSSVSSHT TTSAYLLNKV ATNLNSPRSN SPGSIKAIFS  240
KSLDGSTTSG SSANSVSEFG TIIGNSSDVG SPRSENSVQV STPVSSSARL LNKMAAKFAL  300
MNRLQAMLGD KNQPSVSGNS IDDCTRSGSD GGSSLKTESQ TSEPSPFPDF FHFDGVLGIC  360
RGETCNQLDL AIHHDQALPV EVADDQREKV KLKDGTFDKE SGSFSNGIDL DEQVSVFTNT  420
STTSYDGSSP VEMIVSDLEA ASNWCHCIYF DEFLDAAILD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74080.1	1e-64	MYB family protein