PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON67344.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 429aa MW: 47094.5 Da PI: 7.0164

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON67344.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++q+G g W+ +++ g+ R++k+c++rw +yl PON67344.1 14 KGAWTPEEDQKLLSYIQQHGEGGWRFLPQKAGLMRCGKSCRLRWANYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.9	2e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE++ ++++++ lG++ W+tIa+ ++ +Rt++++k++w++ PON67344.1 67 RGEFSPEEEQTIIKLHAVLGNR-WSTIAKNLP-RRTDNEIKNHWNT 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MGRAPCCNVL GLRKGAWTPE EDQKLLSYIQ QHGEGGWRFL PQKAGLMRCG KSCRLRWANY 60 LRPDIKRGEF SPEEEQTIIK LHAVLGNRWS TIAKNLPRRT DNEIKNHWNT RLKKRLIEMG 120 KHLDHDHPNE SRPCSTLTTT QLVNNPIDQP KAQRSTNDST TTTTSAHLLN EIAASTKLKL 180 SNCLASFLAR HGGGGGGGGG DKRVAVSNLA SVLNKVATTY RKPKSHASLI DAVKEVLSKS 240 SQACSEEIDH GNENVIPNSS YTDNSSCSIS ISDLEIGNDN SSDMGSPSPK SKNGQESRYV 300 HSATSPRAVV LNGIASKLAL VKRCRSTLLS STDWRASSHV SSSEFVDDSH DAAGSAVLMP 360 VSPSSDERFL FQDMGFDPLE LFFEGIVSAT DEFDTNTFSV VGDDRDHDQD DDQMLMRSLF 420 SNFGDELAK

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MGRAPCCNVL GLRKGAWTPE EDQKLLSYIQ QHGEGGWRFL PQKAGLMRCG KSCRLRWANY  60
LRPDIKRGEF SPEEEQTIIK LHAVLGNRWS TIAKNLPRRT DNEIKNHWNT RLKKRLIEMG  120
KHLDHDHPNE SRPCSTLTTT QLVNNPIDQP KAQRSTNDST TTTTSAHLLN EIAASTKLKL  180
SNCLASFLAR HGGGGGGGGG DKRVAVSNLA SVLNKVATTY RKPKSHASLI DAVKEVLSKS  240
SQACSEEIDH GNENVIPNSS YTDNSSCSIS ISDLEIGNDN SSDMGSPSPK SKNGQESRYV  300
HSATSPRAVV LNGIASKLAL VKRCRSTLLS STDWRASSHV SSSEFVDDSH DAAGSAVLMP  360
VSPSSDERFL FQDMGFDPLE LFFEGIVSAT DEFDTNTFSV VGDDRDHDQD DDQMLMRSLF  420
SNFGDELAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-68	MYB family protein