PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON52486.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 519aa MW: 58548.5 Da PI: 6.6307

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON52486.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	7.8e-16	223	269	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed l ++v ++G + W++Ia+++ gR +kqc++rw+++l PON52486.1 223 KGQWTPQEDRMLMQLVGRYGIRKWSKIAKMLS-GRVGKQCRERWHNHL 269 799***************************.***********97 PP
2	Myb_DNA-binding	54.5	2.7e-17	275	317	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + W+++Ed +l++a+k+lG++ W+ Iar+++ gR+++ +k++w+ PON52486.1 275 KETWSEDEDIILIEAHKELGNR-WAEIARRLP-GRSENTIKNHWN 317 578*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MRENNFPLLS SLFPENPLNN NGLPSLELFS SKALFQSNPY HFDHRDHNHH QLPLNGSNIL 60 NSQNGFRHFN SDQSGSSSSN PFLGVSTPCI DSFVPYTNGF SKDLSAFNSS VPFPSQSQSG 120 VMHGLVQSST KPFWGNQNLI SDQPAVPETY DLYPSSTAAT LNFRDVGSAR NLPDDHVSCI 180 STDDKKVCRK KSSSSSSVGQ KKRRRIHMIR KAGKVQKKSN VIKGQWTPQE DRMLMQLVGR 240 YGIRKWSKIA KMLSGRVGKQ CRERWHNHLR PDIRKETWSE DEDIILIEAH KELGNRWAEI 300 ARRLPGRSEN TIKNHWNATK RRQSSKKNRD SNNLPGTLLQ NYIRCLMMNE QNNNNSSSST 360 AENDNIDHNI KTEDRNDDDD DQLIAGGADN PDDDEEDQSN AAATLQVATS ADQLSSDLST 420 CADNNKWANT NNSNNNSEKD YYNVDMSAME VNAANDRNFY SQGYGFRSLL EEMSYGSSVI 480 NDENGVDFQM RSEIESLMRG PGEVKKEMDL MEMICQGKL

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MRENNFPLLS SLFPENPLNN NGLPSLELFS SKALFQSNPY HFDHRDHNHH QLPLNGSNIL  60
NSQNGFRHFN SDQSGSSSSN PFLGVSTPCI DSFVPYTNGF SKDLSAFNSS VPFPSQSQSG  120
VMHGLVQSST KPFWGNQNLI SDQPAVPETY DLYPSSTAAT LNFRDVGSAR NLPDDHVSCI  180
STDDKKVCRK KSSSSSSVGQ KKRRRIHMIR KAGKVQKKSN VIKGQWTPQE DRMLMQLVGR  240
YGIRKWSKIA KMLSGRVGKQ CRERWHNHLR PDIRKETWSE DEDIILIEAH KELGNRWAEI  300
ARRLPGRSEN TIKNHWNATK RRQSSKKNRD SNNLPGTLLQ NYIRCLMMNE QNNNNSSSST  360
AENDNIDHNI KTEDRNDDDD DQLIAGGADN PDDDEEDQSN AAATLQVATS ADQLSSDLST  420
CADNNKWANT NNSNNNSEKD YYNVDMSAME VNAANDRNFY SQGYGFRSLL EEMSYGSSVI  480
NDENGVDFQM RSEIESLMRG PGEVKKEMDL MEMICQGKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	205	RKKSSSSSSVGQKKRRR
2	200	218	QKKRRRIHMIRKAGKVQKK
3	202	206	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	9e-65	MYB family protein