PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON48357.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family LBD
Protein Properties Length: 237aa    MW: 24282.4 Da    PI: 7.5021
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON48357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.65.9e-40291291100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l++el++l+
  PON48357.1  29 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTVCYEAQARLRDPVYGCVAHIFALQQQVVSLQTELSYLQ 127
                 7***********************9989********************************************************************999 PP

      DUF260  99 ee 100
                 ++
  PON48357.1 128 AH 129
                 86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MSANPSSSTS GGGGSSGSGG GGGGGGSGPC GACKFLRRKC VAGCIFAPYF DSEQGAAHFA  60
AVHKVFGASN VSKLLLHIPV HKRLDAVVTV CYEAQARLRD PVYGCVAHIF ALQQQVVSLQ  120
TELSYLQAHL ATLELPSPPP VPPPPTTLIT PPLSIADLPS TSSVPATYDL SSLFEPIVQP  180
WAMQQRPLDP RQFGGATGSS SGSGGGDLQV LARELLDRHG SPPHGSVPCS DGSSPSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.17e-75LBD family protein