PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60417.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

TALE

Protein Properties

Length: 297aa MW: 33974.6 Da PI: 6.4602

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60417.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.1	1.2e-07	246	279	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + PKA60417.1 246 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 279 469*****************************87 PP
2	ELK	22.6	2.4e-08	200	221	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ PKA60417.1 200 ELKLELKQGFRSRIEDVREEIL 221 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MMQGNHHQTL GMDISAGEGE CSSAAAAAAE EEQLRVVKAE MAVHPLWEQL LAAHVGCLRV 60 ATPIDHLPLI DAQLSHSHHL LRSYAALHRP LLSPPEKHDL DNFLTQYLLM LCSFREQLQQ 120 HVRVHAVEAV MACREIEQSL HDLTGVTLEE GTGATMSDEE DDHQMDCPLD PMMDGHDLMG 180 FGPLLPTESE RSLMERVRQE LKLELKQGFR SRIEDVREEI LRKRRAGKLP GDTTSVLKQW 240 WQQHAKWPYP TEDDKAKLVE ETGLQLKQIN NWFINQRKRN WHNNSQSATS LKSKRKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	297	RKRNWHNNSQSATSLKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	1e-152	TALE family protein