PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN26260.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MIKC_MADS

Protein Properties

Length: 194aa MW: 22726.4 Da PI: 10.0375

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN26260.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.9	7.5e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie s rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++g+lye+ss PIN26260.1 9 KRIEKASSRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSPKGRLYEFSS 59 79***********************************************96 PP
2	K-box	70.8	4.1e-24	81	170	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 e+++++l++e+a + k+ie L+++ R+llG +L+++s++eLq++ +qLe+slk+iRs+K +l++e ie+lq kek l een++L k++ PIN26260.1 81 EVEQHMQQLRHEAALMLKKIELLENSYRKLLGHNLGTCSMEELQSIGEQLERSLKNIRSRKAQLFKEDIEKLQTKEKFLLEENERLCKEI 170 56899********************************************************************************98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MVRGKVEMKR IEKASSRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSP KGRLYEFSSS 60 NMQKLIQKYL ELTKERNTGI EVEQHMQQLR HEAALMLKKI ELLENSYRKL LGHNLGTCSM 120 EELQSIGEQL ERSLKNIRSR KAQLFKEDIE KLQTKEKFLL EENERLCKEI WLKQRHVQEK 180 VGQQEIGSCS RSAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	5e-75	MIKC_MADS family protein