PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN21683.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26799.5 Da    PI: 9.7932
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN21683.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF923e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvt+skRrng++KKA+EL vLCda+v+++++sst+kl+ey+s
  PIN21683.1  9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSILMISSTQKLHEYIS 59
                79***********************************************86 PP
2K-box92.95.3e-3171169199
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 yq++ g++l+++++e++q++l+kLk+ ++nL+re+R+++Ge+L++L ++++ +L +++++slk iR++K++++ +qi++++kk ++++e++++L  +++
  PIN21683.1  71 YQTAVGVDLWNSHYEKMQEHLRKLKEVNRNLRREIRQRMGESLNDLGYEQMVNLIEDMDTSLKLIRERKYKVISNQIDTSKKKLRNVEEIHRNLVLEFD 169
                 78889999**************************************************************************************87765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSILMISS TQKLHEYISP  60
TTTTKQLIDQ YQTAVGVDLW NSHYEKMQEH LRKLKEVNRN LRREIRQRMG ESLNDLGYEQ  120
MVNLIEDMDT SLKLIRERKY KVISNQIDTS KKKLRNVEEI HRNLVLEFDA RHEDPHYGLV  180
ENDGDYNSVL GFPSGGPRII ALRLPPNHHP NHHPALHSGG GSDLTTFALL E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-98MIKC_MADS family protein