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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN21683.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 231aa MW: 26799.5 Da PI: 9.7932 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92 | 3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKA+EL vLCda+v+++++sst+kl+ey+s PIN21683.1 9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSILMISSTQKLHEYIS 59 79***********************************************86 PP | |||||||
2 | K-box | 92.9 | 5.3e-31 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yq++ g++l+++++e++q++l+kLk+ ++nL+re+R+++Ge+L++L ++++ +L +++++slk iR++K++++ +qi++++kk ++++e++++L +++ PIN21683.1 71 YQTAVGVDLWNSHYEKMQEHLRKLKEVNRNLRREIRQRMGESLNDLGYEQMVNLIEDMDTSLKLIRERKYKVISNQIDTSKKKLRNVEEIHRNLVLEFD 169 78889999**************************************************************************************87765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSILMISS TQKLHEYISP 60 TTTTKQLIDQ YQTAVGVDLW NSHYEKMQEH LRKLKEVNRN LRREIRQRMG ESLNDLGYEQ 120 MVNLIEDMDT SLKLIRERKY KVISNQIDTS KKKLRNVEEI HRNLVLEFDA RHEDPHYGLV 180 ENDGDYNSVL GFPSGGPRII ALRLPPNHHP NHHPALHSGG GSDLTTFALL E |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-98 | MIKC_MADS family protein |