PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN19948.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MYB
Protein Properties Length: 197aa    MW: 22508.4 Da    PI: 9.7286
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN19948.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.42.2e-201764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++l+ +v+++G+++Wk++a + g++R++k+c++rw++yl
       PIN19948.1 17 KGAWTADEDKKLAAYVEKHGPKRWKSVAMKSGLNRCGKSCRLRWLNYL 64
                     79********************************************97 PP
2Myb_DNA-binding543.9e-1770114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++  Ed+l+++++++lG++ W++Ia++++ gRt++++k++w+ +
       PIN19948.1  70 RGSFSDAEDDLILRLHRLLGNR-WSLIAKRLP-GRTDNEIKNHWNAH 114
                      899*******************.*********.***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MAHKNDTDKA NKRSLNKGAW TADEDKKLAA YVEKHGPKRW KSVAMKSGLN RCGKSCRLRW  60
LNYLRPDIKR GSFSDAEDDL ILRLHRLLGN RWSLIAKRLP GRTDNEIKNH WNAHLRKKAK  120
SMEKLPANPT AALLNTESRS WADQLTMKET QDEASGDING DQLLISPDHH DDASFDFSTQ  180
GTNGMEWVKT FLELEDP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115121LRKKAKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.15e-52MYB family protein