PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN18861.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MYB
Protein Properties Length: 301aa    MW: 33936 Da    PI: 6.5049
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN18861.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv+ ++ +G+g+W+t ++  g+ R++k+c++rw +yl
       PIN18861.1 14 KGPWTPEEDNKLVQFIQIHGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.79.6e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
       PIN18861.1  67 RGRFSFEEEESIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MGRSPCCDKN GLKKGPWTPE EDNKLVQFIQ IHGPGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEESIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHAPRF DLLDLSSLLN STQINLSNLL RLQTLLNPET LTLALNLLSS NNDTLLQPNQ  180
FENVLSQQNP SNVTTSEQVQ SIQGNTGHYP MNCNNSNGQM LQENLTNFCY GGSDQSLNTT  240
SSSNNQNFSF DSSVLSTPLS SPTPLNSAST YIMEDHDLKE SFCSDLLRFE IPGSLELDDF  300
M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.19e-87MYB family protein