PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN18102.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MYB
Protein Properties Length: 301aa    MW: 34028.6 Da    PI: 6.2498
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN18102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.9e-182673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed  l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
       PIN18102.1 26 RGPWTVDEDFTLINYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 73
                     89********************************************97 PP
2Myb_DNA-binding51.42.5e-1679122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
       PIN18102.1  79 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 122
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MDQEHGIKTS RNYNQSEDQE FTELRRGPWT VDEDFTLINY IAHHGEGRWN SLARCAGLKR  60
TGKSCRLRWL NYLRPDVRRG NITLEEQLLI LELHSRWGNR WSKIAQHLPG RTDNEIKNYW  120
RTRVQKHAKQ LKCDVNSKQF KDTMRYLWMP RLIERIQVAA AAGGGGNAGA TSAVPPSSTS  180
TTNLDMGSAQ TALAQPTGVV QTYTPENSSA AASSDSFGTP VSDLTECYNN YPVNQGNNQD  240
YYPANQLSDY DQTLTSPAGY FSQGLEFMEQ NSQWMDGGVV SDNLWNVDDV LFLQQQFNSN  300
A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-91MYB family protein